1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtgagtactcgaaccacttttcgttgcactcgttagccacctgaatattgtctaatcagcttctttgttcttgtgccgccacacagCTTCCTGCCATCCTTTCACTGTCGACGAAGTTTGTGCCCACTGTAATGAACATCCTGAAGAGATTAGCCGACGAGGGTCAAGCACCTGCAGCCGCCCCAG
species | Zea mays |
transcript | GRMZM5G873287_T01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AAGCCATTTGGGTGCAATCAGAAATCGGCAGGGAATTCCAACACGGATTT CTTCCTGCCATCCTTTCACTGTCGACGAAGTTTGTGCCCACTGTAATGAACEST: gi|113702244|gb|EE679748.1|EE679748
genomic: AAGCCATTTGGGTGCAATCAGAAATCGGCAGGGAATTCCAACACGGATTTgtgagtactc ... cgccacacagCTTCCTGCCATCCTTTCACTGTCGACGAAGTTTGTGCCCACTGTAATGAAC
EST: AAGCCATTTGGGTGCAATCAGAAATCGGCAGGGAATTCCAACACGGATTT CTTCCTGCCATCCTTTCACTGTCGACGAAGTTTGTGCCCACTGTAATGAACEST: gi|16377269|gb|BI991847.1|BI991847
genomic: AAGCCATTTGGGTGCAATCAGAAATCGGCAGGGAATTCCAACACGGATTTgtgagtactc ... cgccacacagCTTCCTGCCATCCTTTCACTGTCGACGAAGTTTGTGCCCACTGTAATGAAC
EST: AAGCCATTTGGGTGCAATCAGAAATCGGCAGGGAATTCCAACACGGATTT CTTCCTGCCATCCTTTCACTGTCGACGAAGTTTGTGCCCACTGTAATGAACEST: gi|78179393|gb|DV549766.1|DV549766
genomic: AAGCCATTTGGGTGCAATCAGAAATCGGCAGGGAATTCCAACACGGATTTgtgagtactc ... cgccacacagCTTCCTGCCATCCTTTCACTGTCGACGAAGTTTGTGCCCACTGTAATGAAC
EST: AAGCCATTTGGGTGCAATCAGAATTCGGCAGGGAATTCCAACACGGATTT CTTCCTGCCATCCTTTCACTGTCGACAAAGTTTGTGCCCACTGTAATGAACEST: gi|6859862|gb|AW355856.1|AW355856
genomic: AAGCCATTTGGGTGCAATCAGAAATCGGCAGGGAATTCCAACACGGATTTgtgagtactc ... cgccacacagCTTCCTGCCATCCTTTCACTGTCGACGAAGTTTGTGCCCACTGTAATGAAC
EST: AAGCCATTTGGGTGCAATCAGAATTCGGCAGGGAATTCCAACACGGATTT CTTCCTGCCATCCTTTCACTGTCGACAAAGTTTGTGCCCACTGTAATGAACEST: gi|60397891|gb|DN230707.1|DN230707
genomic: AAGCCATTTGGGTGCAATCAGAAATCGGCAGGGAATTCCAACACGGATTTgtgagtactc ... cgccacacagCTTCCTGCCATCCTTTCACTGTCGACGAAGTTTGTGCCCACTGTAATGAAC
EST: AAGCCATTTGGGTGCAATCAGAATTCGGCAGGGAATTCCAACACGGATTT CTTCCTGCCATCCTTTCACTGTCGACGAAGTTTGTGCCCACTGTAATGAAC
genomic: AAGCCATTTGGGTGCAATCAGAAATCGGCAGGGAATTCCAACACGGATTTgtgagtactc ... cgccacacagCTTCCTGCCATCCTTTCACTGTCGACGAAGTTTGTGCCCACTGTAATGAAC
gttagccacctgaatattgtctaatcagcttctttgttcttgtgccgccacacagCTTCCTGCCATCCTTTCACTGTCGACGAAGTTTGTGCCCACTGTAATGAACATCCTGAAGAGATTAGCCGACGAGGGTCAAGCACCTGCAGCCGCCCCAG
gtctaat putative branch site (score: 314)
tgaatatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagtactcgaaccacttttcgttgcactcgttagccacctgaatattgtctaatcagcttctttgttcttgtgccgccacacagCTTCCTGCCATCCTTTCACTGTCGACGAAGTTTGTGCCCACTGTAATGAACATCCTGAAGAGATTAGCCGACGAGGGTCAAGCACCTGCAGCCGCCCCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG