Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tgcgtactgcatgtggcactatcatattctctaatttctgctgttcatgagaatttggcagcacatttggatccttatgataaacatgattgacttgcagGAGGGAGTCCAACAACTTGTTCTTGGTCTGTACATTATCAGGGGTGACAACAT

Basic information

species Zea mays
transcript GRMZM5G872417_T01
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G872417_T01 (Zea mays), 3'ss of exon 4
lower sequence: LOC_Os05g51650.1 (Oryza sativa), 3'ss of exon 4
-tgcgtactgcatgtggcactatcatattctctaatttctgctgttcatgagaatttggcagcacatttggatccttatgataaacatg-attg-acttgcagGAGGGAGTCCAACAACTTGTTCTTGGTCTGTACATTATCAGGGGTGACAACAT
    |   |  |  || ||   |  || | | |    | |||||||  |   | |   |  | |  ||||  |  | |||| | | |||  ||| || ||||||||||||| ||||| |||||||||||  ||||||| || ||||| ||||||||
caatgcctttaaattgtcatgcttttagtttgtggcatgtgctgttagt---agtacagttgaaattttgagtagtgatgagagaaatgtgttgtacctgcagGAGGGAGTGCAACAGCTTGTTCTTGGGTTGTACATCATAAGGGGCGACAACAT

upper sequence: GRMZM5G872417_T01 (Zea mays), 3'ss of exon 4
lower sequence: GLYMA15G40590.1 (Glycine max), 3'ss of exon 4
tgcgtactgcatgtggcactatcatattctctaatttctgctgttca-----tgagaatttggcagcacatttggatccttatgataaacatgattgacttgcagGAGGGAGTCCAACAACTTGTTCTTGGTCTGTACATTATCAGGGGTGACAACAT
       || ||      ||    | ||||  ||  ||  | ||| |     ||   | ||     |    |    || |  | ||     |  || |||  ||||| || || |||||||||||||||||| | ||||| |||||||||||||||||
---actttgtattaactgctgattttttcttcaaagtc-acggtttaagccttgcacaatttctgtcttcctgatgtcatcttcattcttgtttttaact-acagGAAGGTGTACAACAACTTGTTCTTGGTTTATACATCATCAGGGGTGACAACAT

upper sequence: GRMZM5G872417_T01 (Zea mays), 3'ss of exon 4
lower sequence: GLYMA08G18410.1 (Glycine max), 3'ss of exon 4
tgcgtactgcatgtggcactatcatattctctaatttctgctgttcatgagaatttggcagcacatttggatcct-tatgataaacatgattgact-----tgcagGAGGGAGTCCAACAACTTGTTCTTGGTCTGTACATTATCAGGGGTGACAACAT
|   || |    |  |||   |  | |||| |||  ||  | ||| |  ||  ||   ||     |||   ||   | | || | |||  |||  |     | ||||| || || |||||||||||||||||| ||||||| |||||||||||||| ||
tttatatta---gctgcagattttttttctttaaagtc-acagttta--agccttgcacaatttttttctgtctgatgtcatcatcattcttgtttctaactacagGAAGGTGTGCAACAACTTGTTCTTGGTTTGTACATCATCAGGGGTGACAATAT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|60352709|gb|DN219682.1|DN219682
EST:     CCACCAACATTATACTCGACGAGTCCCATGAGAGGGTCTATTCTAGAAAG                         GAGGGAGTCCAACAACTTGTTCTTGGTCTGTACATTATCAGGGGTGACAAC
genomic: CCACCAACATTATACTCGACGAGTCCCATGAGAGGGTCTATTCTAGAAAGgttagttttg ... tgacttgcagGAGGGAGTCCAACAACTTGTTCTTGGTCTGTACATTATCAGGGGTGACAAC
EST: gi|71309944|gb|DR791257.1|DR791257
EST:     CCACCAACATTATACTCGACGAGTCCCATGAGAGGGTCTATTCTAGAAAG                         GAGGGAGTCCAACAACTTGTTCTTGGTCTGTACATTATCAGGGGTGACAAC
genomic: CCACCAACATTATACTCGACGAGTCCCATGAGAGGGTCTATTCTAGAAAGgttagttttg ... tgacttgcagGAGGGAGTCCAACAACTTGTTCTTGGTCTGTACATTATCAGGGGTGACAAC
EST: gi|78545121|gb|DV622619.1|DV622619
EST:     CCACCAACATTATACTCGACGAGTCCCATGAGAGGGTCTATTCTAGAAAG                         GAGGGAGTCCAACAACTTGTTCTTGGTCTGTACATTATCAGGGGTGACAAC
genomic: CCACCAACATTATACTCGACGAGTCCCATGAGAGGGTCTATTCTAGAAAGgttagttttg ... tgacttgcagGAGGGAGTCCAACAACTTGTTCTTGGTCTGTACATTATCAGGGGTGACAAC
EST: gi|60346643|gb|DN213616.1|DN213616
EST:     CCACCAACATTATACTCGACGAGTCCCATGAGAGGGTCTATTCTAGAAAG                         GAGGGAGTCCAACAACTTGTTCTTGGTCTGTACATTATCACGGGTGACAAC
genomic: CCACCAACATTATACTCGACGAGTCCCATGAGAGGGTCTATTCTAGAAAGgttagttttg ... tgacttgcagGAGGGAGTCCAACAACTTGTTCTTGGTCTGTACATTATCAGGGGTGACAAC
EST: gi|60338206|gb|DN205179.1|DN205179
EST:     CCACCAACATTATACTCGACGAGTCCCATGAGAGGGTCTATTCTAGAAAG                         GAGGGAGTCCAACAACTTGTTCTTGGTCTGTACATTATCAGGGGTGACAAC
genomic: CCACCAACATTATACTCGACGAGTCCCATGAGAGGGTCTATTCTAGAAAGgttagttttg ... tgacttgcagGAGGGAGTCCAACAACTTGTTCTTGGTCTGTACATTATCAGGGGTGACAAC
EST: gi|211108839|gb|FL459273.1|FL459273
EST:     CCACCAACATTATACTCGACGAGTCCCATGAGAGGGTCTATTCTAGAADK                         KAGGGAKTCCAACAACTTGTTCTTGGTCTGTACATTATCAGGGGTGACAAC
genomic: CCACCAACATTATACTCGACGAGTCCCATGAGAGGGTCTATTCTAGAAAGgttagttttg ... tgacttgcagGAGGGAGTCCAACAACTTGTTCTTGGTCTGTACATTATCAGGGGTGACAAC
EST: gi|71309946|gb|DR791258.1|DR791258
EST:     CCACCAACATTATACTCGACGAGTCCCATGAGAGGGTCTATTCTAGAAAG                         GAGGGAGTCCAACAACTTGTTCTTGGTCTGTACATTATCAGGGGTGACAAC
genomic: CCACCAACATTATACTCGACGAGTCCCATGAGAGGGTCTATTCTAGAAAGgttagttttg ... tgacttgcagGAGGGAGTCCAACAACTTGTTCTTGGTCTGTACATTATCAGGGGTGACAAC
EST: gi|93011979|gb|EB637499.1|EB637499
EST:     CCACCAACATTATACTCGACGAGTCCCATGAGAGGGTCTATTCTAGAAAG                         GAGGGAGTCCAACAACTTGTTCTTGGTCTGTACATTATCAGGGGTGACAAC
genomic: CCACCAACATTATACTCGACGAGTCCCATGAGAGGGTCTATTCTAGAAAGgttagttttg ... tgacttgcagGAGGGAGTCCAACAACTTGTTCTTGGTCTGTACATTATCAGGGGTGACAAC
EST: gi|211478436|gb|FL475434.1|FL475434
EST:     CCACCAACATTATACTCGACGAGTCCCATGAGAGGGTCTATTCTAGAAAG                         GAGGGAGTCCAACAACTTGTTCTTGGTCTGTACATTATCAGGGGTGACAAC
genomic: CCACCAACATTATACTCGACGAGTCCCATGAGAGGGTCTATTCTAGAAAGgttagttttg ... tgacttgcagGAGGGAGTCCAACAACTTGTTCTTGGTCTGTACATTATCAGGGGTGACAAC
EST: gi|211119264|gb|FL172295.1|FL172295
EST:     CCACCAACATTATACTCGACGAGTCCCATGAGAGGGTCTATTCTAGAAAG                         GAGGGAGTCCAACAACTTGTTCTTGGTCTGTACATTATCAGGGGTGACAAC
genomic: CCACCAACATTATACTCGACGAGTCCCATGAGAGGGTCTATTCTAGAAAGgttagttttg ... tgacttgcagGAGGGAGTCCAACAACTTGTTCTTGGTCTGTACATTATCAGGGGTGACAAC
EST: gi|31405969|gb|CD484701.1|CD484701
EST:     CCACCAACATTATACTCGACGAGTCCCATGAGAGGGTCTATTCTAGAAAG                         GAGGGAGTCCAACAACTTGTTCTTGGTCTGTACATTATCAGGGGTGACAAC
genomic: CCACCAACATTATACTCGACGAGTCCCATGAGAGGGTCTATTCTAGAAAGgttagttttg ... tgacttgcagGAGGGAGTCCAACAACTTGTTCTTGGTCTGTACATTATCAGGGGTGACAAC
EST: gi|211118481|gb|FL172294.1|FL172294
EST:     CCACCAACATTATACTCGA-GAGTCCCATGAGAGGGTCTATTCTAGAAAG                         GAGGGAGTCCAACAACTTGTTCTTGGTCTGTACATTATCAGGGGTGACAAC
genomic: CCACCAACATTATACTCGACGAGTCCCATGAGAGGGTCTATTCTAGAAAGgttagttttg ... tgacttgcagGAGGGAGTCCAACAACTTGTTCTTGGTCTGTACATTATCAGGGGTGACAAC
EST: gi|88757353|gb|DY541494.1|DY541494
EST:     CCACCAACATTATACTCGACGAGTCCCATGAGAGGGTCTATTCTAGAAAG                         GAGGGAGTCCAACAACTTGTTCTTGGTCTGTACATTATCAGGGGTGACAAC
genomic: CCACCAACATTATACTCGACGAGTCCCATGAGAGGGTCTATTCTAGAAAGgttagttttg ... tgacttgcagGAGGGAGTCCAACAACTTGTTCTTGGTCTGTACATTATCAGGGGTGACAAC
EST: gi|26456923|gb|CA828506.1|CA828506
EST:     CCACCAACATTATACTCGACGAGTCCCATGAGAGGGTCTATTCTAGAAAG                         GAGGGAGTCCAACAACTTGTTCTTGGTCTGTACATTATCAGGGGTGACAAC
genomic: CCACCAACATTATACTCGACGAGTCCCATGAGAGGGTCTATTCTAGAAAGgttagttttg ... tgacttgcagGAGGGAGTCCAACAACTTGTTCTTGGTCTGTACATTATCAGGGGTGACAAC
EST: gi|9254635|gb|BE345103.1|BE345103
EST:     CCACCAACATTATACTCGACGAGTCCCATGAGAGGGTCTATTCTAGAAAG                         GAGGGAGTCCAACAACTTGTTCTTGGTCTGTACATTATCAGGGGTGACAAC
genomic: CCACCAACATTATACTCGACGAGTCCCATGAGAGGGTCTATTCTAGAAAGgttagttttg ... tgacttgcagGAGGGAGTCCAACAACTTGTTCTTGGTCTGTACATTATCAGGGGTGACAAC
EST: gi|60348947|gb|DN215920.1|DN215920
EST:     CCACCAACATTATACTCGACGAGTCCCATGAGAGGGTCTATTCTAGAAAG                         GAGGGAGTCCAACAACTTGTTCTTGGTCTGTACATTATCAGGGGTGACAAC
genomic: CCACCAACATTATACTCGACGAGTCCCATGAGAGGGTCTATTCTAGAAAGgttagttttg ... tgacttgcagGAGGGAGTCCAACAACTTGTTCTTGGTCTGTACATTATCAGGGGTGACAAC
EST: gi|9254766|gb|BE345234.1|BE345234
EST:     CCACCAACATTATACTCGACGAGTCCCATGAGAGGGTCTATTCTAGAAAG                         GAGGGAGTCCAACAACTTGTTCTTGGTCTGTACATTATCAGGGGTGACAAC
genomic: CCACCAACATTATACTCGACGAGTCCCATGAGAGGGTCTATTCTAGAAAGgttagttttg ... tgacttgcagGAGGGAGTCCAACAACTTGTTCTTGGTCTGTACATTATCAGGGGTGACAAC
EST: gi|211064741|gb|FL117482.1|FL117482
EST:     CCACCAACATTATACTCGACGAGTCCCATGAGAGGGTCTATTCTAGAAAG                         GAGGGAGNTCCAACA-CTTGTTCTTGGTCTGTACATTATCAGGGGTGAC
genomic: CCACCAACATTATACTCGACGAGTCCCATGAGAGGGTCTATTCTAGAAAGgttagttttg ... tgacttgcagGAGGGAG-TCCAACAACTTGTTCTTGGTCTGTACATTATCAGGGGTGAC
EST: gi|211119267|gb|FL172298.1|FL172298
EST:     CCACCAACATTATACTCGACGAGTCCCATGAGAGGGTCTATTCTAGAAAG                         GAGGGAGTCCAACAACTTGTTCTTGGTCTGTACATTATCA
genomic: CCACCAACATTATACTCGACGAGTCCCATGAGAGGGTCTATTCTAGAAAGgttagttttg ... tgacttgcagGAGGGAGTCCAACAACTTGTTCTTGGTCTGTACATTATCA
EST: gi|26456102|gb|CA827685.1|CA827685
EST:     CCACCAACATTATACTCGACGAGTCCCATGAGAGGGTCTATTCTAGAAAG                         GAGGGAGTCCAACAACTTGTTCTTGGTCTGTACATTATCAGGGGTGACAAC
genomic: CCACCAACATTATACTCGACGAGTCCCATGAGAGGGTCTATTCTAGAAAGgttagttttg ... tgacttgcagGAGGGAGTCCAACAACTTGTTCTTGGTCTGTACATTATCAGGGGTGACAAC
EST: gi|211064749|gb|FL117490.1|FL117490
EST:     CCACCAACATTATACTCGACGAGTCCCATGAGAGGGTCTATTCTAGAAAG                         GAGGGAGTCCAACAACTTGTT
genomic: CCACCAACATTATACTCGACGAGTCCCATGAGAGGGTCTATTCTAGAAAGgttagttttg ... tgacttgcagGAGGGAGTCCAACAACTTGTT
EST: gi|20811135|gb|BQ295613.1|BQ295613
EST:     CCACCAACATTATACTCGACGAGTCCCATGAGAGGGTCTATTCTAGAAAG                         GAGGGAGTCCAACAACTTGTTCTTGGTCTGTACATTATCAGGGGTGACAAC
genomic: CCACCAACATTATACTCGACGAGTCCCATGAGAGGGTCTATTCTAGAAAGgttagttttg ... tgacttgcagGAGGGAGTCCAACAACTTGTTCTTGGTCTGTACATTATCAGGGGTGACAAC
EST: gi|78544371|gb|DV621869.1|DV621869
EST:     CCACCAACATTATACTCGACGAGTCCCATGAGAGGGTCTATTCTAGAAAG                         GAGGGAGTCCAACAACTTGTTCTTGGTCTGTACATTATCAGGGGTGACAAC
genomic: CCACCAACATTATACTCGACGAGTCCCATGAGAGGGTCTATTCTAGAAAGgttagttttg ... tgacttgcagGAGGGAGTCCAACAACTTGTTCTTGGTCTGTACATTATCAGGGGTGACAAC
EST: gi|211119265|gb|FL172296.1|FL172296
EST:     CCACCAACATTATACTCGACGAGTCCCATGAGAGGGTCTATTCTAGAAAG                         GAGGGAGTCCAACAACTTGTTCTTGGTCTGTACATTATCAGGGGTGACAAC
genomic: CCACCAACATTATACTCGACGAGTCCCATGAGAGGGTCTATTCTAGAAAGgttagttttg ... tgacttgcagGAGGGAGTCCAACAACTTGTTCTTGGTCTGTACATTATCAGGGGTGACAAC
EST: gi|211119266|gb|FL172297.1|FL172297
EST:     CCACCAACATTATACTCGACGAGTCCCATGAGAGGGTCTATTCTAGAAAG                         GAGGGAGTCCAACAACTTGTTCTTGGTCTGTACATTATCAGGGGTGACAAC
genomic: CCACCAACATTATACTCGACGAGTCCCATGAGAGGGTCTATTCTAGAAAGgttagttttg ... tgacttgcagGAGGGAGTCCAACAACTTGTTCTTGGTCTGTACATTATCAGGGGTGACAAC
EST: gi|19770275|gb|BQ034996.1|BQ034996
EST:     CCACCAACATTATACTCGACGAGTCCCATGAGAGGGTCTATTCTAGAAAG                         GAGGGAGTCCAACAACTTGTTCTTGGTCTGTACATTATCAGGGGTGACAAC
genomic: CCACCAACATTATACTCGACGAGTCCCATGAGAGGGTCTATTCTAGAAAGgttagttttg ... tgacttgcagGAGGGAGTCCAACAACTTGTTCTTGGTCTGTACATTATCAGGGGTGACAAC
EST: gi|31557971|gb|CD527183.1|CD527183
EST:     CCACCAACATTATACTCGACGAGTCCCATGAGAGGGTCTATTCTAGAAAG                         GAGGGAGTCCAACAACTTGTTCTTGGTCTGTACATTATCAGGGGTGACAAC
genomic: CCACCAACATTATACTCGACGAGTCCCATGAGAGGGTCTATTCTAGAAAGgttagttttg ... tgacttgcagGAGGGAGTCCAACAACTTGTTCTTGGTCTGTACATTATCAGGGGTGACAAC
EST: gi|5343084|gb|AI795494.1|AI795494
EST:     CCACCAACATTATACTCGACGAGTCCCATGAGAGGGTCTATTCTAGAAAG                         GAGGGAGTCCAACAACTTGTTCTTGGTCTGTACATTATCAGGGGTGACAAC
genomic: CCACCAACATTATACTCGACGAGTCCCATGAGAGGGTCTATTCTAGAAAGgttagttttg ... tgacttgcagGAGGGAGTCCAACAACTTGTTCTTGGTCTGTACATTATCAGGGGTGACAAC
EST: gi|21626250|gb|BQ621171.1|BQ621171
EST:     ACATTATACTCGACGAGTCCCATGAGAGGGTCTATTCTAGAAAG                         GAGGGAGTCCAACAACTTGTTCTTGGTCTGTACATTATCAGGGGTGACAAC
genomic: ACATTATACTCGACGAGTCCCATGAGAGGGTCTATTCTAGAAAGgttagttttg ... tgacttgcagGAGGGAGTCCAACAACTTGTTCTTGGTCTGTACATTATCAGGGGTGACAAC
EST: gi|23199819|gb|BU582384.1|BU582384
EST:     CCACCAACATTATACTCGACGAGTCCCATGAGAGGGTCTATTCTAGAAAG                         GAGGGAGTCCAACAACTTGTTCTTGGTCTGTACATTATCAGGGGTGACAAC
genomic: CCACCAACATTATACTCGACGAGTCCCATGAGAGGGTCTATTCTAGAAAGgttagttttg ... tgacttgcagGAGGGAGTCCAACAACTTGTTCTTGGTCTGTACATTATCAGGGGTGACAAC
EST: gi|78544396|gb|DV621894.1|DV621894
EST:     CCACCAACATTATACTCGACGAGTCCCATGAGAGGGTCTATTCTAGAAAG                         GAGGGAGTCCAACAACTTGTTCTTGGTCTGTACATTATCAGGGGTGACAAC
genomic: CCACCAACATTATACTCGACGAGTCCCATGAGAGGGTCTATTCTAGAAAGgttagttttg ... tgacttgcagGAGGGAGTCCAACAACTTGTTCTTGGTCTGTACATTATCAGGGGTGACAAC
EST: gi|17930348|gb|BM267308.1|BM267308
EST:     CCACCAACATTATACTCGACGAGTCCCATGAGAGGGTCTATTCTAGAAAG                         GAGGGAGTCCAACAACTTGTTCTTGGTCTGTACATTATCAGGGGTGACAAC
genomic: CCACCAACATTATACTCGACGAGTCCCATGAGAGGGTCTATTCTAGAAAGgttagttttg ... tgacttgcagGAGGGAGTCCAACAACTTGTTCTTGGTCTGTACATTATCAGGGGTGACAAC
EST: gi|45567457|gb|CK985581.1|CK985581
EST:     CCACCAACATTATACTCGACGAGTCCCATGAGAGGGTCTATTCTAGAAAG                         GAGGGAGTCCAACAACTTGTTCTTGGTCTGTACATTATCAGGGGTGACAAC
genomic: CCACCAACATTATACTCGACGAGTCCCATGAGAGGGTCTATTCTAGAAAGgttagttttg ... tgacttgcagGAGGGAGTCCAACAACTTGTTCTTGGTCTGTACATTATCAGGGGTGACAAC
EST: gi|37378013|gb|CF625658.1|CF625658
EST:     CCACCAACATTATACTCGACGAGTCCCATGAGAGGGTCTATTCTAGAAAG                         GAGGGAGTCCAACAACTTGTTCTTGGTCTGTACATTATCAGGGGTGACAAC
genomic: CCACCAACATTATACTCGACGAGTCCCATGAGAGGGTCTATTCTAGAAAGgttagttttg ... tgacttgcagGAGGGAGTCCAACAACTTGTTCTTGGTCTGTACATTATCAGGGGTGACAAC
EST: gi|211067473|gb|FL117493.1|FL117493
EST:     CCACCAACATTATACTCGACGAGTCCCATGAGAGGGTCTATTCTARAAAG                         GAGGGAGTCCAACAACTTGTTCTTGG
genomic: CCACCAACATTATACTCGACGAGTCCCATGAGAGGGTCTATTCTAGAAAGgttagttttg ... tgacttgcagGAGGGAGTCCAACAACTTGTTCTTGG
EST: gi|19770274|gb|BQ034995.1|BQ034995
EST:     CCACCAACATTATACTCGACGAGTCCCATGAGAGGGTCTATTCTAGAAAG                         GAGGGAGTCCAACAACTTGTTCTTGGTCTGTACATTATCAGGGGTGACAAC
genomic: CCACCAACATTATACTCGACGAGTCCCATGAGAGGGTCTATTCTAGAAAGgttagttttg ... tgacttgcagGAGGGAGTCCAACAACTTGTTCTTGGTCTGTACATTATCAGGGGTGACAAC
EST: gi|60358027|gb|DN225000.1|DN225000
EST:     CCACCAACATTATACTCGACGAGTCCCATGAGAGGGTCTATTCTAGAAAG                         GAGGGAGTCCAACAACTTGTTCTTGGTCTGTACATTATCAGGGGTGACAAC
genomic: CCACCAACATTATACTCGACGAGTCCCATGAGAGGGTCTATTCTAGAAAGgttagttttg ... tgacttgcagGAGGGAGTCCAACAACTTGTTCTTGGTCTGTACATTATCAGGGGTGACAAC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 283

GGTACGCTCAGGGGATTCGATCAGGCCACCAACATTATACTCGACGAGTCCCATGAGAGGGTCTATTCTAGAAAGgttagttttg ... tgacttgcagGAGGGAGTCCAACAACTTGTTCTTGGTCTGTACATTATCAGGGGTGACAACAT


Block sizes: 49 (upstream exon), 46 (downstream exon)
Score: 134

GGTACGCTCAGGGGATTCGATCAGGCCACCAACATTATACTCGACGAGTCCCATGAGAGGGTCTATTCTAGAAAGgttagttttg ... tgacttgcagGAGGGAGTCCAACAACTTGTTCTTGGTCTGTACATTATCAGGGGTGACAACAT


Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 157

GGTACGCTCAGGGGATTCGATCAGGCCACCAACATTATACTCGACGAGTCCCATGAGAGGGTCTATTCTAGAAAGgttagttttg ... tgacttgcagGAGGGAGTCCAACAACTTGTTCTTGGTCTGTACATTATCAGGGGTGACAACAT


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 83

GGTACGCTCAGGGGATTCGATCAGGCCACCAACATTATACTCGACGAGTCCCATGAGAGGGTCTATTCTAGAAAGgttagttttg ... tgacttgcagGAGGGAGTCCAACAACTTGTTCTTGGTCTGTACATTATCAGGGGTGACAACAT




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

catgagaatttggcagcacatttggatccttatgataaacatgattgacttgcagGAGGGAGTCCAACAACTTGTTCTTGGTCTGTACATTATCAGGGGTGACAACAT
                                          gattgac  putative branch site (score: 83)
                             ttatgataaa  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tgcgtactgcatgtggcactatcatattctctaatttctgctgttcatgagaatttggcagcacatttggatccttatgataaacatgattgacttgcagGAGGGAGTCCAACAACTTGTTCTTGGTCTGTACATTATCAGGGGTGACAACAT

- - - -tgcatgt
- - - - - - - - - - - - - - - - - - tctgctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcagcac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gataaaca