1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...tccattgttaacccccccccccccccacacacacacaaagtgtttccatcacattttgctgatatatgtttgttctattgtggctgcttgacaactgcagGCTGAACCAAAAAGGCAGAGGAGGTAACAAACTGTGAGTGGTAACATCCATATGGGTAAGGGGAGATGTGCTGCTTCTGTGGTGAATCAGCCCTTGCCCT
species | Zea mays |
transcript | GRMZM5G871463_T02 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CAAAGAGACTTTCAAATGCATATGCCACTTCACCAAATTTTGAGCCTAAG GCTGAACCAAAAAGGCAGAGGAGGTAACAAACTGTGAGTGGTAACATCCATEST: gi|78022938|gb|DV491325.1|DV491325
genomic: CAAAGAGACTTTCAAATGCATATGCCACTTCACCAAATTTTGAGCCTAAGgtaagttaat ... acaactgcagGCTGAACCAAAAAGGCAGAGGAGGTAACAAACTGTGAGTGGTAACATCCAT
EST: CAAAGAGACTTTCAAATGCATATGCCACTTCACCAAATTTTGAGCCTAAG GCTGAACCAAAAAGGCAGAGGAGGTAACAAACTGTGAGTGGTAACATCCATEST: gi|37376233|gb|CF624624.1|CF624624
genomic: CAAAGAGACTTTCAAATGCATATGCCACTTCACCAAATTTTGAGCCTAAGgtaagttaat ... acaactgcagGCTGAACCAAAAAGGCAGAGGAGGTAACAAACTGTGAGTGGTAACATCCAT
EST: CAAAGAGACTTTCAAATGCATATGCCACTTCACCAAATTTTGAGCCTAAG GCTGAACCAAAAAGGCAGAGGAGGTAACAAACTGTGAGTGGTAACATCCATEST: gi|37379451|gb|CF626469.1|CF626469
genomic: CAAAGAGACTTTCAAATGCATATGCCACTTCACCAAATTTTGAGCCTAAGgtaagttaat ... acaactgcagGCTGAACCAAAAAGGCAGAGGAGGTAACAAACTGTGAGTGGTAACATCCAT
EST: CAAAGAGACTTTCAAATGCATATGCCACTTCACCAAATTTTGAGCCTAAG GCTGAACCAAAAAGGCAGAGGAGGTAACAAACTGTGAGTGGTAACATCCATEST: gi|60355176|gb|DN222149.1|DN222149
genomic: CAAAGAGACTTTCAAATGCATATGCCACTTCACCAAATTTTGAGCCTAAGgtaagttaat ... acaactgcagGCTGAACCAAAAAGGCAGAGGAGGTAACAAACTGTGAGTGGTAACATCCAT
EST: CAAAGAGACTTTCAAATGCATATGCCACTTCACCAAATTTTGAGCCTAAG GCTGAACCAAAAAGGCAGAGGAGGTAACAAACTGTGAGTGGTAACATCCATEST: gi|211377790|gb|FL432886.1|FL432886
genomic: CAAAGAGACTTTCAAATGCATATGCCACTTCACCAAATTTTGAGCCTAAGgtaagttaat ... acaactgcagGCTGAACCAAAAAGGCAGAGGAGGTAACAAACTGTGAGTGGTAACATCCAT
EST: CAAAGAGACTTTCAAATGCATATGCCACTTCACCAAATTTTGAGCCTAAGCAGEST: gi|78544163|gb|DV621661.1|DV621661
genomic: CAAAGAGACTTTCAAATGCATATGCCACTTCACCAAATTTTGAGCCT-A--AGgtaagttaat ... acaactgc
EST: CAAAGAGACTTTCAAATGCATATGCCACTTCACCAAATTTTGAGCCTAAG GCTGAACCAAAAAGGCAGAGGAGGTAACAAACTGTGAGTGGTAACATCCATEST: gi|40334533|gb|CK368603.1|CK368603
genomic: CAAAGAGACTTTCAAATGCATATGCCACTTCACCAAATTTTGAGCCTAAGgtaagttaat ... acaactgcagGCTGAACCAAAAAGGCAGAGGAGGTAACAAACTGTGAGTGGTAACATCCAT
EST: CAAAGAGACTTTCAAATGCATATGCCACTTCACCAAATTTTGAGCCTAAG GCTGAACCAAAAAGGCAGAGGAGGTAACCAACTGTGAGTGGTAACATCCATEST: gi|5152847|gb|AI759012.1|AI759012
genomic: CAAAGAGACTTTCAAATGCATATGCCACTTCACCAAATTTTGAGCCTAAGgtaagttaat ... acaactgcagGCTGAACCAAAAAGGCAGAGGAGGTAACAAACTGTGAGTGGTAACATCCAT
EST: CAAAGAGACTTTCAAATGCATATGCCACTTCACCAAATTTTGAGCCTAAG GCTGAACCAAAAAGGCAGAGGAGGTAACAAACTGTGAGTGGTAACATCCAT
genomic: CAAAGAGACTTTCAAATGCATATGCCACTTCACCAAATTTTGAGCCTAAGgtaagttaat ... acaactgcagGCTGAACCAAAAAGGCAGAGGAGGTAACAAACTGTGAGTGGTAACATCCAT
ccatcacattttgctgatatatgtttgttctattgtggctgcttgacaactgcagGCTGAACCAAAAAGGCAGAGGAGGTAACAAACTGTGAGTGGTAACATCCATATGGGTAAGGGGAGATGTGCTGCTTCTGTGGTGAATCAGCCCTTGCCCT
atatatgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tccattgttaacccccccccccccccacacacacacaaagtgtttccatcacattttgctgatatatgtttgttctattgtggctgcttgacaactgcagGCTGAACCAAAAAGGCAGAGGAGGTAACAAACTGTGAGTGGTAACATCCATATGGGTAAGGGGAGATGTGCTGCTTCTGTGGTGAATCAGCCCTTGCCCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT