1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gttttgttggattctgtttaccatattatgaaatgtttcaaagtaacataagatagtagtattttatttgtgattgatactgaacttgcttgggacaatctttttttctctagATACTGAAGACTCTTTTTGAGATCATGCTCTTTGAGGATGCTGGTAATCAGTGGAGTCTGAGTCGACCAATACTGAGCCTGATAATGACCAGTGAACAG
species | Zea mays |
transcript | GRMZM5G869993_T03 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CAGTAAATCTCGCACGACATATTGGAGGGTGTCCCAATTTGTTTCCTCAG ATACTGAAGACTCTTTTTGAGATCATGCTCTTTGAGGATGCTGGTAATCAGEST: gi|33092039|gb|CF052033.1|CF052033
genomic: CAGTAAATCTCGCACGACATATTGGAGAGTGTCCCAATTTGTTTCCTCAGgttttgttgg ... ttttctctagATACTGAAGACTCTTTTTGAGATCATGCTCTTTGAGGATGCTGGTAATCAG
EST: CAGTAAATCTCGCACGACATATTGGAGAGTGTCCCAATTTGTTTCCTCAG ATACTGAAGACTCTTTTTGAGATCATGCTCTTTGAGGATGCTGGTAATCAGEST: gi|32836639|gb|CD976317.1|CD976317
genomic: CAGTAAATCTCGCACGACATATTGGAGAGTGTCCCAATTTGTTTCCTCAGgttttgttgg ... ttttctctagATACTGAAGACTCTTTTTGAGATCATGCTCTTTGAGGATGCTGGTAATCAG
EST: CAGTAAATCTCGCACGACATATTGGAGAGTGTCCCAATTTGTTTCCTCAG ATACTGAAGACTCTTTTTGAGATCATGCTCTTTGAGGATGCTGGTAATCAG
genomic: CAGTAAATCTCGCACGACATATTGGAGAGTGTCCCAATTTGTTTCCTCAGgttttgttgg ... ttttctctagATACTGAAGACTCTTTTTGAGATCATGCTCTTTGAGGATGCTGGTAATCAG
gtattttatttgtgattgatactgaacttgcttgggacaatctttttttctctagATACTGAAGACTCTTTTTGAGATCATGCTCTTTGAGGATGCTGGTAATCAGTGGAGTCTGAGTCGACCAATACTGAGCCTGATAATGACCAGTGAACAG
gattgat putative branch site (score: 4)
caatctttttttctct putative PPT
aatcttttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttttgttggattctgtttaccatattatgaaatgtttcaaagtaacataagatagtagtattttatttgtgattgatactgaacttgcttgggacaatctttttttctctagATACTGAAGACTCTTTTTGAGATCATGCTCTTTGAGGATGCTGGTAATCAGTGGAGTCTGAGTCGACCAATACTGAGCCTGATAATGACCAGTGAACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG