1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtaacctttgtggaatctttttctaatgccacctccattttctttttctgacatgttacttgccttcattttcagTCGGCCATCTGAAGATAGAACTATTCCATTAAGTGTTATTGCTGAGCGGACTAAGCTTTCAATCAGTGACGTGGAATGTCTTCTTATGAAGAGCCTCTCG
species | Zea mays |
transcript | GRMZM5G868757_T07 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AAGCTGCTTGAGAAAATCAATATTCTTTGTCTGATGGAGATAATCTTTAG TCGGCCATCTGAAGATAGAACTATTCCATTAAGTGTTATTGCTGAGCGGACEST: gi|6563772|gb|AW231304.1|AW231304
genomic: AAGCTGCTTGAGAAAATCAATATTCTTTGTCTGATGGAGATAATCTTTAGgtaacctttg ... tcattttcagTCGGCCATCTGAAGATAGAACTATTCCATTAAGTGTTATTGCTGAGCGGAC
EST: AAGCTGCTTGAGAAAATCAATATTCTTTGTCTGATGGAGATAATCTTTAG CCGGCCATCTGAAGATAGAACTATTCCATTAAGTGTTATTGCTGAGCGGACEST: gi|60395185|gb|DN228054.1|DN228054
genomic: AAGCTGCTTGAGAAAATCAATATTCTTTGTCTGATGGAGATAATCTTTAGgtaacctttg ... tcattttcagTCGGCCATCTGAAGATAGAACTATTCCATTAAGTGTTATTGCTGAGCGGAC
EST: AAGCTGCTTGAGAAAATCAATATTCTTTGTCTGATGGAGATAATCTTTAG TCGGCCATCTGAAGATAGAACTATTCCATTAAGTGTTATTGCTGAGCGGACEST: gi|194716906|gb|FK934065.1|FK934065
genomic: AAGCTGCTTGAGAAAATCAATATTCTTTGTCTGATGGAGATAATCTTTAGgtaacctttg ... tcattttcagTCGGCCATCTGAAGATAGAACTATTCCATTAAGTGTTATTGCTGAGCGGAC
EST: AAGCTGCTGGAGAAAATCAATATTCTTTGTCTGATGGAGATAATCTTTAG TCGGCCATCTGAAGATAGAACTATTCCATTAAGTGTTATTGCTGAGCGGACEST: gi|211082970|gb|FL307146.1|FL307146
genomic: AAGCTGCTTGAGAAAATCAATATTCTTTGTCTGATGGAGATAATCTTTAGgtaacctttg ... tcattttcagTCGGCCATCTGAAGATAGAACTATTCCATTAAGTGTTATTGCTGAGCGGAC
EST: AAGCTGCTTGAGAAAATCAATATTCTTTGTCTGATGGAGATAATCTTTAG TCGGCCATCTGAAGATAGAACTATTCCATTAAGTGTTATTGCTGAGCGGACEST: gi|28987392|gb|CB351612.1|CB351612
genomic: AAGCTGCTTGAGAAAATCAATATTCTTTGTCTGATGGAGATAATCTTTAGgtaacctttg ... tcattttcagTCGGCCATCTGAAGATAGAACTATTCCATTAAGTGTTATTGCTGAGCGGAC
EST: AAGCTGCTTGAGAAAATCAATATTCTTTGTCTGATGGAGATAATCTTTAG TCGGCCATCTGAAGATAGAACTATTCCATTAAGTGTTATTGCTGAGCGGACEST: gi|6020410|gb|AW065338.1|AW065338
genomic: AAGCTGCTTGAGAAAATCAATATTCTTTGTCTGATGGAGATAATCTTTAGgtaacctttg ... tcattttcagTCGGCCATCTGAAGATAGAACTATTCCATTAAGTGTTATTGCTGAGCGGAC
EST: AGCTGCTTGAGAAAATCAATATTCTTTGTCTGGA-GGAGATAATCTTTAG TCGGCCATCTGAAAATAGAACTATTCCATTAAGTGTTATTGCTGAGCGGACEST: gi|148928048|gb|EC872430.2|EC872430
genomic: AGCTGCTTGAGAAAATCAATATTCTTTGTCTG-ATGGAGATAATCTTTAGgtaacctttg ... tcattttcagTCGGCCATCTGAAGATAGAACTATTCCATTAAGTGTTATTGCTGAGCGGAC
EST: AAGCTGCTTGAGAAAATCAATATTCTTTGTCTGATGGAGATAATCTTTAG TCGGCCATCTGAAGATAGAACTATTCCATTAAGTGTTATTGCTGAGCGGACEST: gi|6020572|gb|AW065605.1|AW065605
genomic: AAGCTGCTTGAGAAAATCAATATTCTTTGTCTGATGGAGATAATCTTTAGgtaacctttg ... tcattttcagTCGGCCATCTGAAGATAGAACTATTCCATTAAGTGTTATTGCTGAGCGGAC
EST: AAGCTGCTTGAGAAAATCAATATTCTTTGTCTGATGGAGATAATCTTTAG TCGGCCATCTGAAAATAGAACTATTCCATTAAEST: gi|32862654|gb|CF002336.1|CF002336
genomic: AAGCTGCTTGAGAAAATCAATATTCTTTGTCTGATGGAGATAATCTTTAGgtaacctttg ... tcattttcagTCGGCCATCTGAAGATAGAACTATTCCATTAA
EST: AAGCTGCTTGAGAAAATCAATATTCTTTGTCTGATGGAGATAATCTTTAG TCGGCCATCTGAAAATAGAACTATTCCATTAAGTGTTATTGCTGAGCGGACEST: gi|24765659|gb|CA400818.1|CA400818
genomic: AAGCTGCTTGAGAAAATCAATATTCTTTGTCTGATGGAGATAATCTTTAGgtaacctttg ... tcattttcagTCGGCCATCTGAAGATAGAACTATTCCATTAAGTGTTATTGCTGAGCGGAC
EST: AAGCTGCTTGAGAAAATCAATATTCTTTGTCTGATGGAGATAATCTTTAG TCGGCCATCTGAAGATAGAACTATTCCATTAAGTGTTATTGCTGAGCGGACEST: gi|149081819|gb|EE170978.2|EE170978
genomic: AAGCTGCTTGAGAAAATCAATATTCTTTGTCTGATGGAGATAATCTTTAGgtaacctttg ... tcattttcagTCGGCCATCTGAAGATAGAACTATTCCATTAAGTGTTATTGCTGAGCGGAC
EST: AAAATCAATATTCTTTGTCTGATGGAGATAATCTTTAG TCGGCCATCTGAAGATAGAACTATTCCATTAAGTGTTATTGCTGAGCGGACEST: gi|211013700|gb|FL252294.1|FL252294
genomic: AAAATCAATATTCTTTGTCTGATGGAGATAATCTTTAGgtaacctttg ... tcattttcagTCGGCCATCTGAAGATAGAACTATTCCATTAAGTGTTATTGCTGAGCGGAC
EST: AAGCTGCTTGAGAAAATCAATATTCTTTGTCTGATGGAGATAATCTTTAG TCGGCCATCTGAAGATAGAACTATTCCATTAAGTGTTATTGCTGAGCGGACEST: gi|148982850|gb|EE028700.2|EE028700
genomic: AAGCTGCTTGAGAAAATCAATATTCTTTGTCTGATGGAGATAATCTTTAGgtaacctttg ... tcattttcagTCGGCCATCTGAAGATAGAACTATTCCATTAAGTGTTATTGCTGAGCGGAC
EST: AAGCTGCTTGAGAAAATCAATATTCTTTGTCTGATGGAGATAATCTTTAG TCGGCCATCTGAAGATAGAACTATTCCATTAAGTGTTATTGCTGAGCGGACEST: gi|211117255|gb|FL447738.1|FL447738
genomic: AAGCTGCTTGAGAAAATCAATATTCTTTGTCTGATGGAGATAATCTTTAGgtaacctttg ... tcattttcagTCGGCCATCTGAAGATAGAACTATTCCATTAAGTGTTATTGCTGAGCGGAC
EST: AAGCTGCTTGAGAAAATCAATATTCTTTGTCTGATGGAGATAATCTTTAG TCGGCCATCTGAAGATAGAACTATTCCATTAAGTGTTATTGCTGAGCGGAC
genomic: AAGCTGCTTGAGAAAATCAATATTCTTTGTCTGATGGAGATAATCTTTAGgtaacctttg ... tcattttcagTCGGCCATCTGAAGATAGAACTATTCCATTAAGTGTTATTGCTGAGCGGAC
ttctaatgccacctccattttctttttctgacatgttacttgccttcattttcagTCGGCCATCTGAAGATAGAACTATTCCATTAAGTGTTATTGCTGAGCGGACTAAGCTTTCAATCAGTGACGTGGAATGTCTTCTTATGAAGAGCCTCTCG
ttctgac putative branch site (score: 2)
cttgccttcattttc putative PPT
attttcttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaacctttgtggaatctttttctaatgccacctccattttctttttctgacatgttacttgccttcattttcagTCGGCCATCTGAAGATAGAACTATTCCATTAAGTGTTATTGCTGAGCGGACTAAGCTTTCAATCAGTGACGTGGAATGTCTTCTTATGAAGAGCCTCTCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA