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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgggtttgccaattacgttcttgctattgaattatggccgattgtttgtgaaactggacatttaatttaatttttcagATATTCAATGGCGTGTTCCTGAAAGTCAACAAGGCTACCATTAACATGCTTCGCAGGGTTGAGCCTTATGTTGCATATGG

Basic information

species Zea mays
transcript GRMZM5G868433_T02
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G868433_T02 (Zea mays), 3'ss of exon 4
lower sequence: LOC_Os04g51630.3 (Oryza sativa), 3'ss of exon 3
------gtgggtttgccaattacgttcttgc---tattgaa-ttatggccgattgtttgtgaaactggacatttaatttaatttttcagATATTCAATGGCGTGTTCCTGAAAGTCAACAAGGCTACCATTAACATGCTTCGCAGGGTTGAGCCTTATGTTGCATATGG
      |||| |||  |||| |  |   |||   | ||||| |||||    | |  | || ||    |  |   |  |||||||| ||||| || ||||| |||||| |||| |||||||| || |||||||||||||| |||||||||||||| ||||||||||||||
gtgggtgtggttttcacaatcatttgaatgcacgtgttgaaattatgatatagtact-gtcaattgaggaaaaaatgttaattttgcagATCTTTAATGGAGTGTTCTTGAAGGTCAACAAAGCCACCATTAACATGCTGCGCAGGGTTGAGCCATATGTTGCATATGG

upper sequence: GRMZM5G868433_T02 (Zea mays), 3'ss of exon 4
lower sequence: LOC_Os08g13690.1 (Oryza sativa), 3'ss of exon 4
gtgggtttgccaatta-cgttcttgctattg----aattatggc---cgattgtttgtgaaactggacattta--atttaatttttcagATATTCAATGGCGTGTTCCTGAAAGTCAACAAGGCTACCATTAACATGCTTCGCAGGGTTGAGCCTTATGTTGCATATGG
|| |||||   ||  |   |||||   | ||    || | | ||   || | || | | ||  | |   || |   ||| ||| | ||||| |||||||| || ||||| || || |||||||| |||||||||||||| |||||||||||||| ||||||||||||||
gttggtttatgaaccagttttcttagaaatgcgtgaactcttgcgtacgctggtgtattaactttgtgcttaattgtttgattctacagATCTTCAATGGTGTCTTCCTCAAGGTTAACAAGGCAACCATTAACATGCTGCGCAGGGTTGAGCCATATGTTGCATATGG

upper sequence: GRMZM5G868433_T02 (Zea mays), 3'ss of exon 4
lower sequence: AT3G13580.2 (Arabidopsis thaliana), 3'ss of exon 4
--gtgggtttgccaattacgttcttgctattgaattatggccgattgtttgtgaa---actggacatttaatttaattttt--cagATATTCAATGGCGTGTTCCTGAAAGTCAACAAGGCTACCATTAACATGCTTCGCAGGGTTGAGCCTTATGTTGCATATGG
       | |    || |     |||  ||    | |     |||       ||    |   |||| ||||  | |||| |  ||||| |||||||| |||||| |||| ||||||||||| |||||||||||||||||| | ||||| || |||||  | |||||
gtaacaatcttatgatgagaactttgtaatatgttaaccaatgatacaaaaggatcgtatctgacacttaaaatcatttattgcagATTTTCAATGGTGTGTTCTTGAAGGTCAACAAGGCAACCATTAACATGCTTCGCCGTGTTGAACCCTATGTAACCTATGG

upper sequence: GRMZM5G868433_T02 (Zea mays), 3'ss of exon 4
lower sequence: AT2G01250.1 (Arabidopsis thaliana), 3'ss of exon 4
---gtgggtttgccaattacg---ttcttgctattgaattatggccga-------ttgtttgtg----aaactggacattta----atttaatttttcagATATTCAATGGCGTGTTCCTGAAAGTCAACAAGGCTACCATTAACATGCTTCGCAGGGTTGAGCCTTATGTTGCATATGG
   || ||||||  |||  |    ||| ||  |  || |  |    ||        | |  |||    | ||||     ||     |||   |  | ||||| |||||||| || ||||| ||||||||||||||||| || |||||||||||| | |||||||| |||||  | || ||
tcagttggtttgataatgtcacatttcatggcaaagactagtatatgaaatgattctatcagtgttgtatactgattgattttggcattgtgtaatgcagATTTTCAATGGTGTTTTCCTTAAAGTCAACAAGGCTACGATGAACATGCTTCGCCGTGTTGAGCCCTATGTCACTTACGG

upper sequence: GRMZM5G868433_T02 (Zea mays), 3'ss of exon 4
lower sequence: Vv09s0054g00140.t01 (Vitis vinifera), 3'ss of exon 2
--------gtgggtttgccaatt-----acgttcttgctattgaattatggccgattgtttg-tgaaactggacatt-taatttaattttt------cagATATTCAATGGCGTGTTCCTGAAAGTCAACAAGGCTACCATTAACATGCTTCGCAGGGTTGAGCCTTATGTTGCATATGG
         || | || | |||      | | | |  |  | |||  ||||    || |||| ||| |   ||  || | ||| | || ||      |||||||||||||| ||||| || ||||| ||||| || || || |||||| | | ||||||||||||||||||  | |||||
ctcttatcatgagcttactaatctaagcaagctatcccattagaaaaatggagtgttctttgatgacataagatcttctcattcacttctttgaatacagATATTCAATGGGGTGTTTCTTAAAGTGAACAAAGCAACAATGAACATGTTGCACAGGGTTGAGCCTTATGTGACTTATGG

upper sequence: GRMZM5G868433_T02 (Zea mays), 3'ss of exon 4
lower sequence: Vv11s0052g00290.t01 (Vitis vinifera), 3'ss of exon 4
--------------------gtgggtttgccaa--ttacgttcttgctattgaattatggccgattgtttgtgaaactggacatttaatttaatttttcagATATTCAATGGCGTGTTCCTGAAAGTCAACAAGGCTACCATTAACATGCTTCGCAGGGTTGAGCCTTATGTTGCATATGG
                     | | | || |||  |||  || |   | ||   |||  |     |  | || |      | | ||  ||||   ||||||||||| ||||| || || |||||||| |||||||| || || || ||||| | ||||||||||||||||||  |||| ||
catgtggttttccttgtgttttagttgtgtcaaagttattttttccttgttaccttacagattcgtagtcgt-atttaaaagaattcttttatggtttcagATATTTAATGGTGTCTTTCTGAAAGTAAACAAGGCAACAATGAATATGCTGCACAGGGTTGAGCCTTATGTGACATACGG

upper sequence: GRMZM5G868433_T02 (Zea mays), 3'ss of exon 4
lower sequence: Vv09s0054g00030.t01 (Vitis vinifera), 3'ss of exon 3
--------gtgggtttgccaatt-----acgttcttgctattgaattatggccgattgtttg-tgaaactggacatt-taatttaattttt------cagATATTCAATGGCGTGTTCCTGAAAGTCAACAAGGCTACCATTAACATGCTTCGCAGGGTTGAGCCTTATGTTGCATATGG
         || | || | |||      | | | |  |  | |||  ||||    || |||| ||| |   ||  || | ||| | || ||      |||||||||||||| ||||| || ||||| ||| | || || || |||||| | | ||||||||||||||||||  | |||||
ctcttatcatgagcttactaatctaagcaagctatcccattagaaaaatggagtgttctttgatgacataagatcttctcattcacttctttgaatacagATATTCAATGGGGTGTTTCTTAAAGTGAACGAAGCAACAATGAACATGTTGCACAGGGTTGAGCCTTATGTGACTTATGG

upper sequence: GRMZM5G868433_T02 (Zea mays), 3'ss of exon 4
lower sequence: Vv09s0054g00060.t01 (Vitis vinifera), 3'ss of exon 3
--------gtgggtttgccaatt-----acgttcttgctattgaattatggccgattgtttg-tgaaactggacatt-taatttaattttt------cagATATTCAATGGCGTGTTCCTGAAAGTCAACAAGGCTACCATTAACATGCTTCGCAGGGTTGAGCCTTATGTTGCATATGG
         || | || | |||      | | | |  |  | |||  ||||    || |||| ||| |   ||  || | ||| | || ||      |||||||||||||| ||||| || ||||| ||||| || || || |||| | | | ||||||||||||||||||  | |||||
ctcttatcatgagcttactaatctaagcaagctatcccattagaaaaatggagtgttctttgatgacataagatcttctcattcacttctttgaatacagATATTCAATGGGGTGTTTCTTAAAGTGAACAAAGCAACAATGAACAAGTTGCACAGGGTTGAGCCTTATGTGACTTATGG

upper sequence: GRMZM5G868433_T02 (Zea mays), 3'ss of exon 4
lower sequence: Vv09s0054g00010.t01 (Vitis vinifera), 3'ss of exon 3
--------gtgggtttgccaatt-----acgttcttgctattgaattatggccgattgtttg-tgaaactggacatt-taatttaattttt------cagATATTCAATGGCGTGTTCCTGAAAGTCAACAAGGCTACCATTAACATGCTTCGCAGGGTTGAGCCTTATGTTGCATATGG
         || | || | |||      | | | |  |  | |||  ||||    || |||| ||| |   |   || | ||| | || ||      |||||||||||||| ||||| || ||||| ||||| || || || |||||| | | ||||||||||||||||||  | |||||
ctcttatcatgagcttactaatctaagcaagctatcccattagaaaaatggagtgttctttgatgatataaggtcttctcattcacttctttgaatacagATATTCAATGGGGTGTTTCTTAAAGTGAACAAAGCAACAATGAACATGTTGCACAGGGTTGAGCCTTATGTGACTTATGG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|4753534|gb|AI657444.1|AI657444
EST:     CCATGCACCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTTGAGGCAG                         ATCTTCAATGGCGTGTTCCTGAAAGTCAACAAGGCTACCATTAACATGCTT
genomic: CCATGCATCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTTGAGGCAGgtgggtttgc ... aatttttcagATATTCAATGGCGTGTTCCTGAAAGTCAACAAGGCTACCATTAACATGCTT
EST: gi|15632349|gb|BI679442.1|BI679442
EST:     CCATGCACCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTTGAGGCAG                         ATCTTCAATGGCGTGTTCCTGAAAGTCAACAAGGCTACCATTAACATGCTT
genomic: CCATGCATCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTTGAGGCAGgtgggtttgc ... aatttttcagATATTCAATGGCGTGTTCCTGAAAGTCAACAAGGCTACCATTAACATGCTT
EST: gi|14701065|gb|BI233483.1|BI233483
EST:     CCATGCACCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTTGAGGCAG                         ATCTTCAATGGCGTGTTCCTGAAAGTCAACAAGGCTACCATTAACATGCTT
genomic: CCATGCATCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTTGAGGCAGgtgggtttgc ... aatttttcagATATTCAATGGCGTGTTCCTGAAAGTCAACAAGGCTACCATTAACATGCTT
EST: gi|4646950|gb|AI622025.1|AI622025
EST:     CCATGCATCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTTGAGGCAG                         ATATTCAATGGCGTGTTCCTGAAAGTCAACAAGGCTACCATTAACATGCTT
genomic: CCATGCATCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTTGAGGCAGgtgggtttgc ... aatttttcagATATTCAATGGCGTGTTCCTGAAAGTCAACAAGGCTACCATTAACATGCTT
EST: gi|32932701|gb|CF037513.1|CF037513
EST:     CCATGCATCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTTGAGGCAG                         ATATTCAATGGCGTGTTCCTGAAAGTCAACAAGGCTACCATTAACATGCTT
genomic: CCATGCATCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTTGAGGCAGgtgggtttgc ... aatttttcagATATTCAATGGCGTGTTCCTGAAAGTCAACAAGGCTACCATTAACATGCTT
EST: gi|24764818|gb|CA399980.1|CA399980
EST:     CCATGCACCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTTGAGGCAG                         ATCTTCAATGGCGTGTTCCTGAAAGTCAACAAGGCTACCATTAACATGCTT
genomic: CCATGCATCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTTGAGGCAGgtgggtttgc ... aatttttcagATATTCAATGGCGTGTTCCTGAAAGTCAACAAGGCTACCATTAACATGCTT
EST: gi|211171434|gb|FK956282.1|FK956282
EST:     CCATGCACCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTTGAGGCAG                         ATCTTCAATGGCGTGTTCCTGAAAGTCAACAAGGCTACCATTAACATGCTT
genomic: CCATGCATCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTTGAGGCAGgtgggtttgc ... aatttttcagATATTCAATGGCGTGTTCCTGAAAGTCAACAAGGCTACCATTAACATGCTT
EST: gi|5915128|gb|AW052769.1|AW052769
EST:     CCATGCACCCTAAGACCAGGAAGATATTGCAGCTTCTCCGTTTGAGGCAG                         ATCTTCAATGGCGTGTTCCTGAAAGTCAACAAGGCTACCATTAACATGCTT
genomic: CCATGCATCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTTGAGGCAGgtgggtttgc ... aatttttcagATATTCAATGGCGTGTTCCTGAAAGTCAACAAGGCTACCATTAACATGCTT
EST: gi|211318387|gb|FL341244.1|FL341244
EST:     CCATGCATCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTTGAGGCAG                         ATATTCAATGGCGTGTTCCTGAAAGTCAACAARGCTACCATTAACATGCTT
genomic: CCATGCATCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTTGAGGCAGgtgggtttgc ... aatttttcagATATTCAATGGCGTGTTCCTGAAAGTCAACAAGGCTACCATTAACATGCTT
EST: gi|76922808|gb|DV169184.1|DV169184
EST:     CCATGCATCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTTGAGGCAG                         ATATTCAATGGCGTGTTCCTGAAAGTCAACAAGGCTACCATTAACATGCTT
genomic: CCATGCATCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTTGAGGCAGgtgggtttgc ... aatttttcagATATTCAATGGCGTGTTCCTGAAAGTCAACAAGGCTACCATTAACATGCTT
EST: gi|166438461|gb|EG182561.1|EG182561
EST:     CCATGCATCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTTGAGGCAG                         ATATTCAATGGCGTGTTCC
genomic: CCATGCATCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTTGAGGCAGgtgggtttgc ... aatttttcagATATTCAATGGCGTGTTCC
EST: gi|15554187|gb|BI644185.1|BI644185
EST:     CCATGCACCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTTGAGGCAG                         ATCTTCAATGGCGTGTTCCTGAAAGTCAACAAGGCTACCATTAACATGCTT
genomic: CCATGCATCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTTGAGGCAGgtgggtttgc ... aatttttcagATATTCAATGGCGTGTTCCTGAAAGTCAACAAGGCTACCATTAACATGCTT
EST: gi|9733002|gb|BE511754.1|BE511754
EST:     CCATGCACCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTTGAGGCAG                         ATCTTCAATGGCGTGTTCCTGAAAGTCAACAAGGCTACCATTAACATGCTT
genomic: CCATGCATCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTTGAGGCAGgtgggtttgc ... aatttttcagATATTCAATGGCGTGTTCCTGAAAGTCAACAAGGCTACCATTAACATGCTT
EST: gi|60350172|gb|DN217145.1|DN217145
EST:     CCATGCATCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTTGAGGCAG                         ATATTCAATGGCGTGTTCCTGAAAGTCAACAAGGCTACCATTAACATGCTT
genomic: CCATGCATCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTTGAGGCAGgtgggtttgc ... aatttttcagATATTCAATGGCGTGTTCCTGAAAGTCAACAAGGCTACCATTAACATGCTT
EST: gi|211173119|gb|FK956304.1|FK956304
EST:     CCATGCATCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTTGAGGCAG                         ATATTCAATGGCGTGTTCCTGAAAGTCAACANG-CTACCATTAACATGCTT
genomic: CCATGCATCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTTGAGGCAGgtgggtttgc ... aatttttcagATATTCAATGGCGTGTTCCTGAAAGTCAACAAGGCTACCATTAACATGCTT
EST: gi|5846778|gb|AI999861.1|AI999861
EST:     CCATGCNCCCTAAGACCAGGAAGATATTGCAGCTTCTCCGTTTGAGGCAG                         ATCTTCAATGGCGTGTTCCTGAAAGTCAACAAGGCTACCATTAACATGCTT
genomic: CCATGCATCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTTGAGGCAGgtgggtttgc ... aatttttcagATATTCAATGGCGTGTTCCTGAAAGTCAACAAGGCTACCATTAACATGCTT
EST: gi|15590144|gb|BI674760.1|BI674760
EST:     CCATGCACCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTTGAGGCAG                         ATCTTCAATGGCGTGTTCCTGAAAGTCAACAAGGCTACCATTAACATGCTT
genomic: CCATGCATCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTTGAGGCAGgtgggtttgc ... aatttttcagATATTCAATGGCGTGTTCCTGAAAGTCAACAAGGCTACCATTAACATGCTT
EST: gi|148940442|gb|EC885240.2|EC885240
EST:     CCATGCATCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTTGAGGCAG                         ATATTCAATGGCGTGTTCCTGAAAGTCAACAAGGCTACCATTAACATGCTT
genomic: CCATGCATCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTTGAGGCAGgtgggtttgc ... aatttttcagATATTCAATGGCGTGTTCCTGAAAGTCAACAAGGCTACCATTAACATGCTT
EST: gi|211173115|gb|FK956300.1|FK956300
EST:     CCATGCATCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTTGAGGCAG                         ATATTCAATGGCGTGT
genomic: CCATGCATCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTTGAGGCAGgtgggtttgc ... aatttttcagATATTCAATGGCGTGT
EST: gi|94477419|gb|EB706377.1|EB706377
EST:     CCATGCATCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTTGAGGCAG                         ATATTCAATGGCGTGTTCCTGAAAGTCAACAAGGCTACCATTAACATGCTT
genomic: CCATGCATCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTTGAGGCAGgtgggtttgc ... aatttttcagATATTCAATGGCGTGTTCCTGAAAGTCAACAAGGCTACCATTAACATGCTT
EST: gi|211192857|gb|FL432748.1|FL432748
EST:     CCATGCATCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTTGAGGCAG                         ATATTCAATGGCGTGTTCCTGAAAGTCAACAAGGCTACCATTMACAT-STT
genomic: CCATGCATCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTTGAGGCAGgtgggtttgc ... aatttttcagATATTCAATGGCGTGTTCCTGAAAGTCAACAAGGCTACCATTAACATGCTT
EST: gi|148941047|gb|EC885904.2|EC885904
EST:     CCATGCATCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTTGAGGCAG                         ATATTCAATGGCGTGTTCCTGAAAGTCAACAAGGCTACCATTAACATGCTT
genomic: CCATGCATCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTTGAGGCAGgtgggtttgc ... aatttttcagATATTCAATGGCGTGTTCCTGAAAGTCAACAAGGCTACCATTAACATGCTT
EST: gi|5922428|gb|AW055717.1|AW055717
EST:     CCATGCNCCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTTGAGGCAG                         ATCTTCAATGGCGTGTTCCTGAAAGTCAACAAGGCTACCATTAACATGCTT
genomic: CCATGCATCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTTGAGGCAGgtgggtttgc ... aatttttcagATATTCAATGGCGTGTTCCTGAAAGTCAACAAGGCTACCATTAACATGCTT
EST: gi|5915120|gb|AW052761.1|AW052761
EST:     CCATGCACCCTAAGACCAGGAAGATATTGCAGCTTCTCCGTTTGAGGCAG                         ATCTTCAATGGCGTGTTCCTGAAAGTCAACAAGGCTACCATTAACATGCTT
genomic: CCATGCATCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTTGAGGCAGgtgggtttgc ... aatttttcagATATTCAATGGCGTGTTCCTGAAAGTCAACAAGGCTACCATTAACATGCTT
EST: gi|9733001|gb|BE511753.1|BE511753
EST:     CCATGCACCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTTGAGGCAG                         ATCTTCAATGGCGTGTTCCTGAAAGTCAACAAGGCTACCATTAACATGCTT
genomic: CCATGCATCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTTGAGGCAGgtgggtttgc ... aatttttcagATATTCAATGGCGTGTTCCTGAAAGTCAACAAGGCTACCATTAACATGCTT
EST: gi|78025749|gb|DV494136.1|DV494136
EST:     CCATGCACCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTTGAGGCAG                         ATCTTCAATGGCGTGTTCCTGAAAGTCAACAAGGCTACCATTAACATGCTT
genomic: CCATGCATCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTTGAGGCAGgtgggtttgc ... aatttttcagATATTCAATGGCGTGTTCCTGAAAGTCAACAAGGCTACCATTAACATGCTT
EST: gi|20299953|gb|BQ162896.1|BQ162896
EST:     CCATGCACCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTTGAGGCAG                         ATCTTCAATGGAGTGTTCCTGAAAGTCAACAAAGCAACCATTAACATGCTT
genomic: CCATGCATCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTTGAGGCAGgtgggtttgc ... aatttttcagATATTCAATGGCGTGTTCCTGAAAGTCAACAAGGCTACCATTAACATGCTT
EST: gi|60338800|gb|DN205773.1|DN205773
EST:     CCATGCATCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTTGAGGCAG                         ATATTCAATGGCGTGTTCCTGAAAGTCAACAAGGCTACCATTAACATGCTT
genomic: CCATGCATCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTTGAGGCAGgtgggtttgc ... aatttttcagATATTCAATGGCGTGTTCCTGAAAGTCAACAAGGCTACCATTAACATGCTT
EST: gi|148935172|gb|EC879210.2|EC879210
EST:     CCATGCATCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTTGAGGCAG                         ATATTCAATGGCGTGTTCCTGAAAGTCAACAAGGCTACCATTAACATGCTT
genomic: CCATGCATCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTTGAGGCAGgtgggtttgc ... aatttttcagATATTCAATGGCGTGTTCCTGAAAGTCAACAAGGCTACCATTAACATGCTT
EST: gi|71438751|gb|DR819801.1|DR819801
EST:     CCATGCATCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTTGAGGCAG                         ATATTCAATGGCGTGTTCCTGAAAGTCAACAAGGCTACCATTAACATGCTT
genomic: CCATGCATCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTTGAGGCAGgtgggtttgc ... aatttttcagATATTCAATGGCGTGTTCCTGAAAGTCAACAAGGCTACCATTAACATGCTT
EST: gi|60344948|gb|DN211921.1|DN211921
EST:     CCATGCATCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTTGAGGCAG                         ATATTCAATGGCGTGTTCCTGAAAGTCAACAAGGCTACCATTAACATGCTT
genomic: CCATGCATCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTTGAGGCAGgtgggtttgc ... aatttttcagATATTCAATGGCGTGTTCCTGAAAGTCAACAAGGCTACCATTAACATGCTT
EST: gi|21987690|gb|BQ779218.1|BQ779218
EST:     CCATGCACCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTTGAGGCAG                         ATCTTCAATGGCGTGTTCCTGAAAGTCAACAAGGCTACCATTAACATGCTT
genomic: CCATGCATCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTTGAGGCAGgtgggtttgc ... aatttttcagATATTCAATGGCGTGTTCCTGAAAGTCAACAAGGCTACCATTAACATGCTT
EST: gi|71444618|gb|DR825668.1|DR825668
EST:     CTATGCATCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTTGAGGCAG                         ATATTCAATGGCGTGTTCCTGAAAGTCAACAAGGCTACCATTAACATGCTT
genomic: CCATGCATCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTTGAGGCAGgtgggtttgc ... aatttttcagATATTCAATGGCGTGTTCCTGAAAGTCAACAAGGCTACCATTAACATGCTT
EST: gi|15313112|gb|BI478567.1|BI478567
EST:     CCATGCACCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTTGAGGCAG                         ATCTTCAATGGCGTGTTCCTGAAAGTCAACAAGGCTACCATTAACATGCTT
genomic: CCATGCATCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTTGAGGCAGgtgggtttgc ... aatttttcagATATTCAATGGCGTGTTCCTGAAAGTCAACAAGGCTACCATTAACATGCTT
EST: gi|31350410|gb|CD434767.1|CD434767
EST:     CCATGCACCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTTGAGGCAG                         ATCTTCGATGGCGTGTTCCTGAAAGTCAACAAGGCTACCATTAACATGCTT
genomic: CCATGCATCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTTGAGGCAGgtgggtttgc ... aatttttcagATATTCAATGGCGTGTTCCTGAAAGTCAACAAGGCTACCATTAACATGCTT
EST: gi|32936880|gb|CF041699.1|CF041699
EST:     GCAGCTTCTGCGATTGAGGCAG                         ATCTTCAATGGTGTGTTCCTCAAAGTCAACAAGGCGACTATTAACATGCTA
genomic: GCAGCTTCTGCGTTTGAGGCAGgtgggtttgc ... aatttttcagATATTCAATGGCGTGTTCCTGAAAGTCAACAAGGCTACCATTAACATGCTT
EST: gi|60340627|gb|DN207600.1|DN207600
EST:     CCATGCATCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTTGAGGCAG                         ATATTCAATGGCGTGTTCCTGAAAGTCAACAAGGCTACCATTAACATGCTT
genomic: CCATGCATCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTTGAGGCAGgtgggtttgc ... aatttttcagATATTCAATGGCGTGTTCCTGAAAGTCAACAAGGCTACCATTAACATGCTT
EST: gi|78084905|gb|DV513298.1|DV513298
EST:     CCATGCATCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTTGAGGCAG                         ATATTCAATGGCGTGTTCCTGAAAGTCAACAAGGCTACCATTAACATGCTT
genomic: CCATGCATCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTTGAGGCAGgtgggtttgc ... aatttttcagATATTCAATGGCGTGTTCCTGAAAGTCAACAAGGCTACCATTAACATGCTT
EST: gi|32917266|gb|CF022078.1|CF022078
EST:     CCATGCATCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTTGAGGCAG                         ATATTCAATGGCGTGTTCCTGAAAGTCAACAAGGCTACCATTAACATGCTT
genomic: CCATGCATCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTTGAGGCAGgtgggtttgc ... aatttttcagATATTCAATGGCGTGTTCCTGAAAGTCAACAAGGCTACCATTAACATGCTT
EST: gi|60357671|gb|DN224644.1|DN224644
EST:     CTAAGACCAGGAAGATATTGCAGCTTTTGCGTTTGAGGCAG                         ATATTCAATGGCGTGTTCCTGAAAGTCAACAAGGCTACCATTAACATGCTT
genomic: CTAAGACCAGGAAGATATTGCAGCTTCTGCGTTTGAGGCAGgtgggtttgc ... aatttttcagATATTCAATGGCGTGTTCCTGAAAGTCAACAAGGCTACCATTAACATGCTT
EST: gi|5296239|gb|AI782919.1|AI782919
EST:     CCATGCACCCTAAGACCAGGAAGATATTGCAGCTTCTCCGTTTGAGGCAG                         ATCTTCAATGGCGTGTTCCTGAAAGTCAACAAGGCTACCATTAACATGCTT
genomic: CCATGCATCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTTGAGGCAGgtgggtttgc ... aatttttcagATATTCAATGGCGTGTTCCTGAAAGTCAACAAGGCTACCATTAACATGCTT
EST: gi|6021537|gb|AW066465.1|AW066465
EST:     CCATGCACCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTTGAGGCAG                         ATCTTCAATGGCGTGTTCCTGAAAGTCAACAAGGCTACCATTAACATGCTT
genomic: CCATGCATCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTTGAGGCAGgtgggtttgc ... aatttttcagATATTCAATGGCGTGTTCCTGAAAGTCAACAAGGCTACCATTAACATGCTT
EST: gi|32866949|gb|CF006631.1|CF006631
EST:     CCATGCATCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTTGAGGCAG                         ATATTCAATGGCGTGTTCCTGAAAGTCAACAAGGCTACCATTAACATGCTT
genomic: CCATGCATCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTTGAGGCAGgtgggtttgc ... aatttttcagATATTCAATGGCGTGTTCCTGAAAGTCAACAAGGCTACCATTAACATGCTT
EST: gi|15313739|gb|BI478933.1|BI478933
EST:     CCATGCACCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTTGAGGCAG                         ATCTTCAATGGCGTGTTCCTGAAAGTCAACAAGGCTACCATTAACATGCTT
genomic: CCATGCATCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTTGAGGCAGgtgggtttgc ... aatttttcagATATTCAATGGCGTGTTCCTGAAAGTCAACAAGGCTACCATTAACATGCTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctattgaattatggccgattgtttgtgaaactggacatttaatttaatttttcagATATTCAATGGCGTGTTCCTGAAAGTCAACAAGGCTACCATTAACATGCTTCGCAGGGTTGAGCCTTATGTTGCATATGG
                                         atttaat  putative branch site (score: 4)
                                               tttttc  CT-rich tract
                                  acatttaatttaattt  TA-rich tract