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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aatctcatattcatgagagtatttacagttaaatgatcaatggtctgtttatcttgtttcactttatcaaatttgttgactcattttcttctgtgcacagTTGTTACTTCAGAAAGTGGGAAATTCCTCTTATCAGCTAAACGACACCGCAAAACCACATGCACCGAGTACACTATATCAATGGATTCTGGCAACATCTC

Basic information

species Zea mays
transcript GRMZM5G866954_T03
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G866954_T03 (Zea mays), 3'ss of exon 4
lower sequence: LOC_Os01g64700.2 (Oryza sativa), 3'ss of exon 4
aatctcatattcatgaga---gtatttacagttaaatgatcaatggtctgt-ttatcttgtttcactttatcaaatttgttgactcattttcttctgtgcacagTTGTTACTTCAGAAAGTGGGAAATTCCTCTTATCAGCTAAACGACACCGCAAAACCACATGCACCGAGTACACTATATCAATGGATTCTGGCAACATCTC
   ||   |  |||||||    | |||    | |||||| |||  | | |  ||||||   |||| || |||||||||| ||| ||||| ||||   ||  ||||||||||| | ||| ||||||||||| ||||| | |||||| ||||||| ||||| || ||||| ||||||||||| ||||||| |||||||||||||||
-gccttgcaaccatgagatttatttttcttatgaaatgaccaagtgcccgcattatctgacttcagttaatcaaatttgctgaatcattctctt---tgtgcagTTGTTACTGCGGAAGGTGGGAAATTCGTCTTAGCCGCTAAAAGACACCGTAAAACAACTTGCACAGAGTACACTATTTCAATGGTTTCTGGCAACATCTC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|149087044|gb|EE176585.2|EE176585
EST:     GAGGAATAAGTCAAAATCCACTTACCATCTCTACTTGTGCCTTAGCAATG                         TTGTTACTTCAGAAAGTGGGAAATTCCTCTTATCAGCTAAACGACACCGCA
genomic: GAGGAATAAGTCAAAATCCACTTACCATCTCTACCTGTGCCTTAGCAATGgtacgtcaca ... ctgtgcacagTTGTTACTTCAGAAAGTGGGAAATTCCTCTTATCAGCTAAACGACACCGCA
EST: gi|149096527|gb|EE182274.2|EE182274
EST:     GAGGAATAAGTCAAAATCCACTTACCATCTCTACCTGTGCCTTAGCAATG                         TTGTTACTTCAGAAAGTGGGGAATTCCTCTTATCAGCTAAACGACACCGCA
genomic: GAGGAATAAGTCAAAATCCACTTACCATCTCTACCTGTGCCTTAGCAATGgtacgtcaca ... ctgtgcacagTTGTTACTTCAGAAAGTGGGAAATTCCTCTTATCAGCTAAACGACACCGCA
EST: gi|76015170|gb|DT942340.1|DT942340
EST:     AGGAATAAGTCAAAATCCACTTACCATCTCTACCTGTGCCTTAGGCA-TG                         TTGTTACTTCAGAAAGTGGGGAATTCCTCTTATCAGCTAAACGACACCGC
genomic: AGGAATAAGTCAAAATCCACTTACCATCTCTACCTGTGCCTTAG-CAATGgtacgtcaca ... ctgtgcacagTTGTTACTTCAGAAAGTGGGAAATTCCTCTTATCAGCTAAACGACACCGC
EST: gi|148966465|gb|EE017475.2|EE017475
EST:     GAGGAATAAGTCAAAATCCACTTACCATCTCTACCTGTGCCTTAGCCATG                         TTGTTACTTCAGAAAGTGGGAAATTCCTCTTATCAGCTAAA
genomic: GAGGAATAAGTCAAAATCCACTTACCATCTCTACCTGTGCCTTAGCAATGgtacgtcaca ... ctgtgcacagTTGTTACTTCAGAAAGTGGGAAATTCCTCTTATCAGCTAAA
EST: gi|148991448|gb|EE032953.2|EE032953
EST:     AGGAATAAGTCAAAATCCACTTACCATCTCTACCTGTGCCTTTAGCA-TG                         TTGTTACTTCAGAAAGTGGGAAATTCCTCTTATCAGCTAAACGACACCGC
genomic: AGGAATAAGTCAAAATCCACTTACCATCTCTACCTGTGCCTT-AGCAATGgtacgtcaca ... ctgtgcacagTTGTTACTTCAGAAAGTGGGAAATTCCTCTTATCAGCTAAACGACACCGC
EST: gi|148944361|gb|EC889462.2|EC889462
EST:     GAGGAATAAGTCAAAATCCACTTACCATCTCTACCTGTGCCTTAGCAATG                         TTGTTACTTCAGAAAGTGGGAAATTCCTCTTATCAGCTAAACGACACCGCA
genomic: GAGGAATAAGTCAAAATCCACTTACCATCTCTACCTGTGCCTTAGCAATGgtacgtcaca ... ctgtgcacagTTGTTACTTCAGAAAGTGGGAAATTCCTCTTATCAGCTAAACGACACCGCA
EST: gi|76018831|gb|DT946001.1|DT946001
EST:     AGGAATAAGTCAAAATCCACTTTAC-ATCTCTACCTGTGCCTTAGCAATG                         TTGTTACTTCAGAAAGTGGGATATTCCTCTTATCAGCTAAACG
genomic: AGGAATAAGTCAAAATCCACTT-ACCATCTCTACCTGTGCCTTAGCAATGgtacgtcaca ... ctgtgcacagTTGTTACTTCAGAAAGTGGGAAATTCCTCTTATCAGCTAAACG
EST: gi|71304052|gb|DR788147.1|DR788147
EST:     GAGGAATAAGTCAAAATCCACTTACCATCTCTACCTGTGCCTTAGCAATG                         TTGTTACTTCAGAAAGTGGGAAATTTCTCTTTATCAGCTAA-CGACACCGC
genomic: GAGGAATAAGTCAAAATCCACTTACCATCTCTACCTGTGCCTTAGCAATGgtacgtcaca ... ctgtgcacagTTGTTACTTCAGAAAGTGGGAAATTCCTCTT-ATCAGCTAAACGACACCGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtttatcttgtttcactttatcaaatttgttgactcattttcttctgtgcacagTTGTTACTTCAGAAAGTGGGAAATTCCTCTTATCAGCTAAACGACACCGCAAAACCACATGCACCGAGTACACTATATCAATGGATTCTGGCAACATCTC
                            tgttgac  putative branch site (score: 3)
                                  ctcattttcttctgt  CT-rich tract
                 tttatcaaatttgtt  TA-rich tract