1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtattgtggctgtggttcttggttgttatgccatatccatacttaatggagctaacaccaatgaattctgttgcttatagGTTATGATACTGAGCCATGACCGTGAAAGAGGCCGAGTCAGCCTTTCTACTAAGAAGCTTGAGCCAACACCTGGTGACATGATCCGCAATCCCAAGCTTG
species | Zea mays |
transcript | GRMZM5G862107_T01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: ACCGTGTTGCAGATATCTCAACAGTTCTGCAACCAGGAGATACCCTCAAG GTTATGATACTGAGCCATGACCGTGAAAGAGGCCGAGTCAGCCTTTCTACTEST: gi|32935407|gb|CF040219.1|CF040219
genomic: ACCGTGTTGCAGATATCTCAACAGTTCTGCAACCAGGAGATACCCTCAAGgtattgtggc ... ttgcttatagGTTATGATACTGAGCCATGACCGTGAAAGAGGCCGAGTCAGCCTTTCTACT
EST: ACCGTGTTGCAGATATCTCAACAGTTCTGCAACCAGGAGATACCCTCAAG GTTATGATACTGAGCCATGACCGTGAAAGAGGCCGAGTCAGCCTTTCTACT
genomic: ACCGTGTTGCAGATATCTCAACAGTTCTGCAACCAGGAGATACCCTCAAGgtattgtggc ... ttgcttatagGTTATGATACTGAGCCATGACCGTGAAAGAGGCCGAGTCAGCCTTTCTACT
ttatgccatatccatacttaatggagctaacaccaatgaattctgttgcttatagGTTATGATACTGAGCCATGACCGTGAAAGAGGCCGAGTCAGCCTTTCTACTAAGAAGCTTGAGCCAACACCTGGTGACATGATCCGCAATCCCAAGCTTG
agctaac putative branch site (score: 218)
ttctgtt putative PPT
atacttaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtattgtggctgtggttcttggttgttatgccatatccatacttaatggagctaacaccaatgaattctgttgcttatagGTTATGATACTGAGCCATGACCGTGAAAGAGGCCGAGTCAGCCTTTCTACTAAGAAGCTTGAGCCAACACCTGGTGACATGATCCGCAATCCCAAGCTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT