Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagacttcactctgcttcaattttcttgagtgtataaattacttttcccagtattcaacttgatgttgctttcgtggtgatcagATATATCATGTCAATTTGAGAGAAGCAGCTTGGTTCAGTGCACTCCCTTGGGTGATGATGGCAGTTTTAGGCTATGTGGCTGGTGTTGTATCGGACATGC

Basic information

species Zea mays
transcript GRMZM5G856598_T01
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G856598_T02 (Zea mays), 3'ss of exon 4
lower sequence: LOC_Os01g63290.1 (Oryza sativa), 3'ss of exon 4
gtaagacttcactctgcttcaattttcttgagtgtataaattact--tttcccagtattc-----aacttgatg--ttgctttcg-tggtgatcagATATATCATGTCAATTTGAGAGAAGCAGCTTGGTTCAGTGCACTCCCTTGGGTGATGATGGCAGTTTTAGGCTATGTGGCTGGTGTTGTATCGGACATGC
||||| | ||| || | ||||   | ||  |      ||||||    | |||||  |||      |   || |    |||| ||| ||||||||||||||||||||| ||| |||||||||| || ||||| ||||||||||| ||||| ||||||||||||||||||||||| |||||||||||||| |||| ||
gtaagtcctcattcagtttcagagtgctgaataaagaaaattaaaaatctcccaacatttttgtaatactgctaatctgctatcgatggtgatcagATATATCATGTTAATCTGAGAGAAGCTGCATGGTTTAGTGCACTCCCCTGGGTCATGATGGCAGTTTTAGGCTATGTTGCTGGTGTTGTATCAGACAGGC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtgtataaattacttttcccagtattcaacttgatgttgctttcgtggtgatcagATATATCATGTCAATTTGAGAGAAGCAGCTTGGTTCAGTGCACTCCCTTGGGTGATGATGGCAGTTTTAGGCTATGTGGCTGGTGTTGTATCGGACATGC
                            acttgat  putative branch site (score: 5)
                                       ctttcgt  putative PPT
     taaattactttt  TA-rich tract