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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactacactgttttggttgatcttgtattcatttttattttctattttggaatcagaatacattacaattgtggtgaagtttaatgtgattgttgaagttatggactttagtgcatcatctcaattgccaagcctttctctatcatgttttattcatgcacttttcttgcattgttttcagTGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAG

Basic information

species Zea mays
transcript GRMZM5G850355_T04
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G850355_T02 (Zea mays), 3'ss of exon 5
lower sequence: LOC_Os02g42320.1 (Oryza sativa), 3'ss of exon 3
gtactacactgttttggttgatcttgtattcatttttattttctattttggaatcagaatacattacaattgtggtgaagtttaatgtgattgttga--agttatggactttagtgcatcatctcaattgccaagcctttctctatcatgttttattcatgcacttttcttgcattgttttcagTGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAG
                                                                                |||||  |  |||||     ||||      | ||            | |  ||        || || ||   |  || |   || | |   ||| |  |||||||||||||||||| ||||| |||||||| |||||||||||||| || || |||||||||||||||||||||||||||
--------------------------------------------------------------------------------tttaaattatttgttagtttgttacatctctcagcttgctgctgttaatatcagttgcaattcaataatacat-gtttacttacctgt---gcacttctttcagTGGGATGGGTCCCGATTTCCGTGTTCTTGTGAGAAAAAGTCGGAAACAAGCACAGCAGTATTATCGGTTGTACAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6020544|gb|AW065472.1|AW065472
EST:     GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAG                         TGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
genomic: GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAGgtactacact ... ttgttttcagTGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
EST: gi|60355411|gb|DN222384.1|DN222384
EST:     CTAACACCAAATATTGGAGTTGTCTATAG                         TGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
genomic: CTAACACCAAATATTGGAGTTGTCTATAGgtactacact ... ttgttttcagTGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
EST: gi|60346286|gb|DN213259.1|DN213259
EST:     GTGCAAAAGATTCAGGCACTAACACCAAATATAGGAGTTGTCTATAG                         TGGGATGGGTCCAGATTTTCGTGTTATGGTGAGAAAAAGTCGAAAGCAGGC
genomic: GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAGgtactacact ... ttgttttcagTGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
EST: gi|15427202|gb|BI543024.1|BI543024
EST:     GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAG                         TGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
genomic: GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAGgtactacact ... ttgttttcagTGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
EST: gi|32934694|gb|CF039506.1|CF039506
EST:     GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAG                         TGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
genomic: GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAGgtactacact ... ttgttttcagTGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
EST: gi|211017640|gb|FL189740.1|FL189740
EST:     GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAG                         TGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTC
genomic: GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAGgtactacact ... ttgttttcagTGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTC
EST: gi|40337252|gb|CK371322.1|CK371322
EST:     GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAG                         TGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
genomic: GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAGgtactacact ... ttgttttcagTGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
EST: gi|22520740|gb|BU079551.1|BU079551
EST:     GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAG                         TGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
genomic: GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAGgtactacact ... ttgttttcagTGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
EST: gi|5566889|gb|AI881800.1|AI881800
EST:     GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAG                         TGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
genomic: GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAGgtactacact ... ttgttttcagTGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
EST: gi|14242859|gb|BG840665.2|BG840665
EST:     GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAG                         TGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
genomic: GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAGgtactacact ... ttgttttcagTGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
EST: gi|211014870|gb|FL189739.1|FL189739
EST:     GTGCAAAAGATTCAGGCACTAACACCAAAATATTGGAGTTGTCTATAG                         TGGGATGGGTC-AGATTTTCG
genomic: GTGCAAAAGATTCAGGCACTAACACCAAA-TATTGGAGTTGTCTATAGgtactacact ... ttgttttcagTGGGATGGGTCCAGATTTTCG
EST: gi|211535545|gb|FL366410.1|FL366410
EST:     GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAG                         TGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
genomic: GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAGgtactacact ... ttgttttcagTGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
EST: gi|32908069|gb|CF012882.1|CF012882
EST:     GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAG                         TGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
genomic: GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAGgtactacact ... ttgttttcagTGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
EST: gi|9254141|gb|BE344609.1|BE344609
EST:     GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAG                         TGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
genomic: GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAGgtactacact ... ttgttttcagTGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
EST: gi|211408164|gb|FL390201.1|FL390201
EST:     GTGCAAAATATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAG                         TGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
genomic: GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAGgtactacact ... ttgttttcagTGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
EST: gi|87156656|gb|DY401445.1|DY401445
EST:     GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAG                         TGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
genomic: GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAGgtactacact ... ttgttttcagTGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
EST: gi|14203539|gb|BG837216.1|BG837216
EST:     GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAG                         TGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
genomic: GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAGgtactacact ... ttgttttcagTGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
EST: gi|9461620|gb|BE453822.1|BE453822
EST:     GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAG                         TGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
genomic: GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAGgtactacact ... ttgttttcagTGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
EST: gi|211156517|gb|FL164231.1|FL164231
EST:     GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAG                         TGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
genomic: GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAGgtactacact ... ttgttttcagTGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
EST: gi|5456374|gb|AI834064.1|AI834064
EST:     GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAG                         TGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
genomic: GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAGgtactacact ... ttgttttcagTGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
EST: gi|31355634|gb|CD439991.1|CD439991
EST:     GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAG                         TGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
genomic: GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAGgtactacact ... ttgttttcagTGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
EST: gi|29167732|gb|CB410992.1|CB410992
EST:     GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAG                         TGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
genomic: GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAGgtactacact ... ttgttttcagTGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
EST: gi|113702959|gb|EE680463.1|EE680463
EST:     G-GCAAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTTTATAG                         TGGGATGGGTCCAGATTTTCGTGTTTTGGTGAGAAAAAGTCGAAAGCAGGC
genomic: GTGC-AAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAGgtactacact ... ttgttttcagTGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
EST: gi|8367928|gb|BE050873.1|BE050873
EST:     GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAG                         TGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
genomic: GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAGgtactacact ... ttgttttcagTGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
EST: gi|14204267|gb|BG837944.1|BG837944
EST:     GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAG                         TGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
genomic: GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAGgtactacact ... ttgttttcagTGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
EST: gi|12967998|gb|BG264945.1|BG264945
EST:     GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAG                         TGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
genomic: GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAGgtactacact ... ttgttttcagTGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
EST: gi|211158124|gb|FL164253.1|FL164253
EST:     GTGCAAAAGATTCAGGCACTAACACCAAATATTGCAGTTGTCTATAG                         TGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
genomic: GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAGgtactacact ... ttgttttcagTGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
EST: gi|211370171|gb|FL333604.1|FL333604
EST:     GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAG                         TGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
genomic: GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAGgtactacact ... ttgttttcagTGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
EST: gi|32912475|gb|CF017287.1|CF017287
EST:     GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAG                         TGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
genomic: GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAGgtactacact ... ttgttttcagTGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
EST: gi|211100498|gb|FL307608.1|FL307608
EST:     GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAG                         TGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
genomic: GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAGgtactacact ... ttgttttcagTGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
EST: gi|67018206|gb|CO446955.1|CO446955
EST:     GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAG                         TGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
genomic: GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAGgtactacact ... ttgttttcagTGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
EST: gi|26559204|gb|CA831439.1|CA831439
EST:     GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAG                         TGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
genomic: GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAGgtactacact ... ttgttttcagTGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
EST: gi|211352174|gb|FL343457.1|FL343457
EST:     GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAG                         TGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
genomic: GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAGgtactacact ... ttgttttcagTGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
EST: gi|32906923|gb|CF011736.1|CF011736
EST:     GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAG                         TGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
genomic: GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAGgtactacact ... ttgttttcagTGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gccaagcctttctctatcatgttttattcatgcacttttcttgcattgttttcagTGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGCACAGCAGTATTATCGGTTGTACAAG
                                             ttgttttc  CT-rich tract
              tatcatgttttatt  TA-rich tract