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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaaattttatgttctgcctttacaatctcatccttccctcagtatctacactgcgtcttgtttggtttgcgcatttctaagtttgctgtcttttgaaattaactgtcctagGCTCTTCTAGGGGCAATCGGAGTGGGGGAACAGTCCGCAACTGTCATAGGTGCTACTTTTCAG

Basic information

species Zea mays
transcript GRMZM5G846548_T02
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88755251|gb|DY539392.1|DY539392
EST:     GGTCTCTCCACATACATCCGTGCAATGTTGTCTACACAA                         GCTCTTCTAGGGGCAATCGGAGTGGGGGAACAGTCCGCAACTGTCATAGGT
genomic: GGTCTCTCCACATACATCCGTGCAATGTTGTCTACACAAgtaaaatttt ... actgtcctagGCTCTTCTAGGGGCAATCGGAGTGGGGGAACAGTCCGCAACTGTCATAGGT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttgtttggtttgcgcatttctaagtttgctgtcttttgaaattaactgtcctagGCTCTTCTAGGGGCAATCGGAGTGGGGGAACAGTCCGCAACTGTCATAGGTGCTACTTTTCAG
                                        aattaac  putative branch site (score: 2)
                                              ctgtcct  CT-rich tract
                                tcttttgaaattaa  TA-rich tract