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gtatatgagctacctttgagtttattaatcacttaagattgggtgtctattttctaaccatcccgctgccagGATGTCATACCGCACATGGCTCGGGAATATGAATTCGAGTATGAGCTCGTCACATATAAATGGCCAACATGGTTACACAAGCAGAAAGAGAAGCAAAGGA
species | Zea mays |
transcript | GRMZM5G846198_T01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GGCCAGTGAAGTTTTGGTTCATTAAGAATTATCTATCTCCACAGTTCAAG GATGTCATACCGCACATGGCTCGGGAATATGAATTCGAGTATGAGCTCGTCEST: gi|32850563|gb|CD990244.1|CD990244
genomic: GGCCAGTGAAGTTTTGGTTCATTAAGAATTATCTATCTCCACAGTTCAAGgtatatgagc ... ccgctgccagGATGTCATACCGCACATGGCTCGGGAATATGAATTCGAGTATGAGCTCGTC
EST: GGCCAGTGAAGTTTTGGTTCATTAAGAATTATCTATCTCCACAGTTCAAG GATGTCATACCGCACATGGCTCGGGAATATGAATTCGAGTATGAGCTCGTCEST: gi|32835266|gb|CD974944.1|CD974944
genomic: GGCCAGTGAAGTTTTGGTTCATTAAGAATTATCTATCTCCACAGTTCAAGgtatatgagc ... ccgctgccagGATGTCATACCGCACATGGCTCGGGAATATGAATTCGAGTATGAGCTCGTC
EST: GGCCAGTGAAGTTTTGGTTCATTAAGAATTATCTATCTCCACAGTTCAAG GATGTCATACCGCACATGGCTCGGGAATATGAATTCGAGTATGAGCTCGTCEST: gi|116823777|gb|EC867342.1|EC867342
genomic: GGCCAGTGAAGTTTTGGTTCATTAAGAATTATCTATCTCCACAGTTCAAGgtatatgagc ... ccgctgccagGATGTCATACCGCACATGGCTCGGGAATATGAATTCGAGTATGAGCTCGTC
EST: TGAAGTTTTGGTTCATTAAGAATTATCTATCTCCACAGTTCAAG GATGTCATACCGCACATGGCTCGGGAATATGAATTCGAGTATGAGCTCGTCEST: gi|32850558|gb|CD990239.1|CD990239
genomic: TGAAGTTTTGGTTCATTAAGAATTATCTATCTCCACAGTTCAAGgtatatgagc ... ccgctgccagGATGTCATACCGCACATGGCTCGGGAATATGAATTCGAGTATGAGCTCGTC
EST: GGCCAGTGAAGTTTTGGTTCATTAAGAATTATCTATCTCCACAGTTCAAG GATGTCATACCGCACATGGCTCGGGAATATGAATTCGAGTATGAGCTCGTCEST: gi|32932543|gb|CF037355.1|CF037355
genomic: GGCCAGTGAAGTTTTGGTTCATTAAGAATTATCTATCTCCACAGTTCAAGgtatatgagc ... ccgctgccagGATGTCATACCGCACATGGCTCGGGAATATGAATTCGAGTATGAGCTCGTC
EST: GGCCAGTGAAGTTTTGGTTCATTAAGAATTATCTATCTCCACAGTTCAAG GATGTCATACCGCACATGGCTCGGGAATATGAATTCGAGTATGAGCTCGTCEST: gi|32850631|gb|CD990312.1|CD990312
genomic: GGCCAGTGAAGTTTTGGTTCATTAAGAATTATCTATCTCCACAGTTCAAGgtatatgagc ... ccgctgccagGATGTCATACCGCACATGGCTCGGGAATATGAATTCGAGTATGAGCTCGTC
EST: GGCCAGTGAAGTTTTGGTTCATTAAGAATTATCTATCTCCACAGTTCAAG GATGTCATACCGCACATGGCTCGGGAATATGAATTCGAGTATGAGCTCGTCEST: gi|9743043|gb|BE519191.1|BE519191
genomic: GGCCAGTGAAGTTTTGGTTCATTAAGAATTATCTATCTCCACAGTTCAAGgtatatgagc ... ccgctgccagGATGTCATACCGCACATGGCTCGGGAATATGAATTCGAGTATGAGCTCGTC
EST: GGCCAGTGAAGTTTTGGTTCATTAAGAATTATCTATCTCCACAGTTCAAG GATGTCATACCGCACATGGCTCGGGAATATGAATTCGAGTATGAGCTCGTC
genomic: GGCCAGTGAAGTTTTGGTTCATTAAGAATTATCTATCTCCACAGTTCAAGgtatatgagc ... ccgctgccagGATGTCATACCGCACATGGCTCGGGAATATGAATTCGAGTATGAGCTCGTC
gagtttattaatcacttaagattgggtgtctattttctaaccatcccgctgccagGATGTCATACCGCACATGGCTCGGGAATATGAATTCGAGTATGAGCTCGTCACATATAAATGGCCAACATGGTTACACAAGCAGAAAGAGAAGCAAAGGA
ttctaac putative branch site (score: 146)
ccatccc CT-rich tract
tattaatcacttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatatgagctacctttgagtttattaatcacttaagattgggtgtctattttctaaccatcccgctgccagGATGTCATACCGCACATGGCTCGGGAATATGAATTCGAGTATGAGCTCGTCACATATAAATGGCCAACATGGTTACACAAGCAGAAAGAGAAGCAAAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG