Sequence
atgc intronic sequence ATGC exonic sequence...tggagccacgaggtttgctcatgacacatgacaggatttccccccacctaatgaacttaattttccaactcacttagaaccctatgactgtactttgtagGTTGCTATCTCCATAAAACCATTGAAGGTTCGCAACTGGTTTCTGCCAGAAATGCCAGGATTGATAACTGATTTTGTTATCTCTCTTGATGATCGTTATC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM5G837351_T01 (Zea mays), 3'ss of exon 4
lower sequence: LOC_Os01g68770.1 (Oryza sativa), 3'ss of exon 5
--------------tggagccacgaggtttgctcatgacacatgacaggatttccccccacctaatgaacttaattttccaactcacttagaaccctatgactgtactttgtagGTTGCTATCTCCATAAAACCATTGAAGGTTCGCAACTGGTTTCTGCCAGAAATGCCAGGATTGATAACTGATTTTGTTATCTCTCTTGATGATCGTTATC
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gtttgtccataactccatgccaatgttcttgctattttcttgtataaag--ccctatttgtccaatttgtttagttgtttactctccttatgcttgcatgacatgacatgacagGTTGCTATATCTATAAAACCATTGAAAGTGCGCAACTGGATTCTGCCTGAAATGCCAGGACTGATAACTGATTTTGTTATCTCTCTGGATGATCGCTATC
upper sequence: GRMZM5G837351_T01 (Zea mays), 3'ss of exon 4
lower sequence: GLYMA05G28400.1 (Glycine max), 3'ss of exon 5
-tggagccacgaggtttgctcatgacacatgacaggatttccccccacctaatgaa--cttaattttccaactcacttagaaccctatgactgtactttgtagGTTGCTATCTCCATAAAACCATTGAAGGTTCGCAACTGGTTTCTGCCAGAAATGCCAGGATTGATAACTGATTTTGTTATCTCTCTTGATGATCGTTATC
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atattcatactcattttgtaaagtagtctggctagtgtttgtgcagcttcaaccaaggcataatgatcaataatacttacagact--agactg-actttgcagGTTGCAATATCAGTGAAACCATTGAAAGTGCAAAACTGGATTCTTCCAGAAATGCCAGGGCTTATAACTGATTTTCTGATATCTCTCGATGATCGGTTTC
upper sequence: GRMZM5G837351_T01 (Zea mays), 3'ss of exon 4
lower sequence: GLYMA08G11400.1 (Glycine max), 3'ss of exon 5
tggagccacgag-gtttgctcatgacacatgacaggatttccccccacct-aatgaa--cttaattttccaactcacttagaaccctatgactgtactttgtagGTTGCTATCTCCATAAAACCATTGAAGGTTCGCAACTGGTTTCTGCCAGAAATGCCAGGATTGATAACTGATTTTGTTATCTCTCTTGATGATCGTTATC
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-atatccatactcattttgtattgtcatctggtatgcgtttgtgcagcttcaaccaaggtataatgatcaataatacttaca-cacta-gactg-actttgcagGTTGCAATATCAGTGAAACCATTGAAAGTGCAAAACTGGATTCTTCCAGAAATGCCTGGGCTTATAACTGATTTTCTGATATCTCTTGATGATCGGTTTC atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.acctaatgaacttaattttccaactcacttagaaccctatgactgtactttgtagGTTGCTATCTCCATAAAACCATTGAAGGTTCGCAACTGGTTTCTGCCAGAAATGCCAGGATTGATAACTGATTTTGTTATCTCTCTTGATGATCGTTATC
aactcac putative branch site (score: 2)
atgaacttaatttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tggagccacgaggtttgctcatgacacatgacaggatttccccccacctaatgaacttaattttccaactcacttagaaccctatgactgtactttgtagGTTGCTATCTCCATAAAACCATTGAAGGTTCGCAACTGGTTTCTGCCAGAAATGCCAGGATTGATAACTGATTTTGTTATCTCTCTTGATGATCGTTATC
- - gccacga
- - - - - - - - gctcatg
- - - - - - - - - - - - cacatga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -atgactg