1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gttagatataaattacgaaatgcaggggtctgtacttgagtttttctgagacgcatgttatgctgagttgtcaaagctgcttctctgtgatcttttgtaatttcagCTATCAAACACCGGAGGAAGACTGATAATAGCATCTGATGGCATATGGGACGCGTTGTCCAATGAAGCAGCTGCAAAAGCATGCAGAGGATTGCCTGCAG
species | Zea mays |
transcript | GRMZM5G836628_T02 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TGGATGTTGGAGAGTTCATTGTGCCCATTCCACATGTCAAGCAAGTCAAG CTATCAAACACCGGAGGAAGACTGATAATAGCATCTGATGGCATATGGGACEST: gi|93012388|gb|EB637908.1|EB637908
genomic: TGGATGTTGGAGAGTTCATTGTGCCCATTCCACATGTCAAGCAAGTCAAGgttagatata ... gtaatttcagCTATCAAACACCGGAGGAAGACTGATAATAGCATCTGATGGCATATGGGAC
EST: TGGATGTTGGAGAGTTCATTGTGCCCATTCCACATGTCAAGCAGGTCAAG CTATCAAACACCGGAGGAAGACTGATAATAGCATCTGEST: gi|148932058|gb|EC875401.2|EC875401
genomic: TGGATGTTGGAGAGTTCATTGTGCCCATTCCACATGTCAAGCAAGTCAAGgttagatata ... gtaatttcagCTATCAAACACCGGAGGAAGACTGATAATAGCATCTG
EST: TGGATGTTGGAGAGTTCATTGTGCCCATTCCACATGTCAAGCAAGTCAAG CTATCAAACACCGGAGGAAGACTGATAATAGCATCTGATGGCATATGGGACEST: gi|71430183|gb|DR811233.1|DR811233
genomic: TGGATGTTGGAGAGTTCATTGTGCCCATTCCACATGTCAAGCAAGTCAAGgttagatata ... gtaatttcagCTATCAAACACCGGAGGAAGACTGATAATAGCATCTGATGGCATATGGGAC
EST: TGGATGTTGGAGAGTTCATTGTGCCCATTCCACATGTCAAGCAAGTCAAG CTATCAAACACGGGAGGAAGACTGATAATAGCATCTGATGGCATATGGGACEST: gi|149109561|gb|EE190266.2|EE190266
genomic: TGGATGTTGGAGAGTTCATTGTGCCCATTCCACATGTCAAGCAAGTCAAGgttagatata ... gtaatttcagCTATCAAACACCGGAGGAAGACTGATAATAGCATCTGATGGCATATGGGAC
EST: TGGATGTTGGAGAGTTCATTGTGCCCATTCCACATGTCAAGCAAGTCAAG CTATCAAACACCGGAGGAAGACTGANTA-TAGCATCTGATGGCATATGGGAEST: gi|148967746|gb|EE019020.2|EE019020
genomic: TGGATGTTGGAGAGTTCATTGTGCCCATTCCACATGTCAAGCAAGTCAAGgttagatata ... gtaatttcagCTATCAAACACCGGAGGAAGACTGA-TAATAGCATCTGATGGCATATGGGA
EST: TGGATGTTGGAGAGTTCATTGTGCCCATTCCACATGTCAAGCAAGTCAAG CTATCAAACACCGGAGGAAGACTGATAEST: gi|91050128|gb|EB160546.1|EB160546
genomic: TGGATGTTGGAGAGTTCATTGTGCCCATTCCACATGTCAAGCAAGTCAAGgttagatata ... gtaatttcagCTATCAAACACCGGAGGAAGACTGATA
EST: GGATGTTGGAGAGTTCATTGTGCCCATTCCACATGTNCA-GCAAGTCAAG CTATCAAACACCGGAGGAAGACTGATAATAGCATCTGATGGCATATGGGACEST: gi|148958254|gb|EC904468.2|EC904468
genomic: GGATGTTGGAGAGTTCATTGTGCCCATTCCACATGT-CAAGCAAGTCAAGgttagatata ... gtaatttcagCTATCAAACACCGGAGGAAGACTGATAATAGCATCTGATGGCATATGGGAC
EST: TGGATGTTGGAGAGTTCATTGTGCCCATTCCACATGTCAAGCAAGTCAAG CTATCAAACACCGGAGGAAGACTGATAATAGCATCTGATGGCATATGGGACEST: gi|149014901|gb|EE044621.2|EE044621
genomic: TGGATGTTGGAGAGTTCATTGTGCCCATTCCACATGTCAAGCAAGTCAAGgttagatata ... gtaatttcagCTATCAAACACCGGAGGAAGACTGATAATAGCATCTGATGGCATATGGGAC
EST: TGGATGTTGGAGAGTTCATTGTGCCCATTCCACATGTCAAGCAAGTCAAG CTATCAAACCCCGGAGGAAGACTGATAATAGCATCTGATGGCATATGGGACEST: gi|78110646|gb|DV529051.1|DV529051
genomic: TGGATGTTGGAGAGTTCATTGTGCCCATTCCACATGTCAAGCAAGTCAAGgttagatata ... gtaatttcagCTATCAAACACCGGAGGAAGACTGATAATAGCATCTGATGGCATATGGGAC
EST: TGGATGTTGGAGAGTTCATTGTGCCCATTCCACATGTCAAGCAAGTCAAG CTATCAAACACCGGAGGAAGACTGATAATAGCATCTGATGGCATATGGGACEST: gi|149101969|gb|EE287481.2|EE287481
genomic: TGGATGTTGGAGAGTTCATTGTGCCCATTCCACATGTCAAGCAAGTCAAGgttagatata ... gtaatttcagCTATCAAACACCGGAGGAAGACTGATAATAGCATCTGATGGCATATGGGAC
EST: GGATGTTGGAGAGTTCATTGTGCCCATTCCACATGTCAAGCAAGTNCA-G CTATCAAACACCGGAGGAAGACTGATAATAGCATCTGATGGCATATGGGA
genomic: GGATGTTGGAGAGTTCATTGTGCCCATTCCACATGTCAAGCAAGT-CAAGgttagatata ... gtaatttcagCTATCAAACACCGGAGGAAGACTGATAATAGCATCTGATGGCATATGGGA
cgcatgttatgctgagttgtcaaagctgcttctctgtgatcttttgtaatttcagCTATCAAACACCGGAGGAAGACTGATAATAGCATCTGATGGCATATGGGACGCGTTGTCCAATGAAGCAGCTGCAAAAGCATGCAGAGGATTGCCTGCAG
tcttttgt CT-rich tract
atcttttgtaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttagatataaattacgaaatgcaggggtctgtacttgagtttttctgagacgcatgttatgctgagttgtcaaagctgcttctctgtgatcttttgtaatttcagCTATCAAACACCGGAGGAAGACTGATAATAGCATCTGATGGCATATGGGACGCGTTGTCCAATGAAGCAGCTGCAAAAGCATGCAGAGGATTGCCTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG