1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...ccacttctatggctccaatatctgcagcacattccttctcttgaacatattattttgttgttagcttacaatagaaagtagctgtttttggttcttgcagTGTTTATTATGATATATAGCTGAAGCTATCATTTATCTTGCCTCCATAGTCTGCTGGTGTGCAATTTTCAAATCGGCCAAATGTTCTTGTCACACGAGCA
species | Zea mays |
transcript | GRMZM5G834205_T03 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GGCATACTATGAGTTGGTG TGTTTATTATGATATATAGCTGAAGCTATCATTTATCTTGCCTCCATAGTCEST: gi|149050347|gb|EE155591.2|EE155591
genomic: GGCATACTATGAGTTGGTGgtaggtatca ... gttcttgcagTGTTTATTATGATATATAGCTGAAGCTATCATTTATCTTGCCTCCATAGTC
EST: AGTACTATGAGGCATACTATGAGTTGGTG TGTTTATTATGATATATAGCTGAAGCTATCATTTATCTTGCCTCCATAGTCEST: gi|71761883|gb|DR959820.1|DR959820
genomic: AGTACTATGAGGCATACTATGAGTTGGTGgtaggtatca ... gttcttgcagTGTTTATTATGATATATAGCTGAAGCTATCATTTATCTTGCCTCCATAGTC
EST: GAGCTAAAGCAAGGTTCCCTCAGTACTATGAGGCATACTATGAGTTGGTG TGTTTATTATGATATATAGCTGAAGCTATCATTTATCTTGCCTCCATAGTCEST: gi|50325060|gb|CO520186.1|CO520186
genomic: GAGCTAAAGCAAGGTTCCCTCAGTACTATGAGGCATACTATGAGTTGGTGgtaggtatca ... gttcttgcagTGTTTATTATGATATATAGCTGAAGCTATCATTTATCTTGCCTCCATAGTC
EST: GAGCTAAAGCAAGGTTCCCTCAGTACTATGAGGCATACTATGAGTTGGTG TGTTTATTATGATATATAGCTGAAGCTATCATTTATCTTGCCTCCATAGTCEST: gi|50325059|gb|CO520185.1|CO520185
genomic: GAGCTAAAGCAAGGTTCCCTCAGTACTATGAGGCATACTATGAGTTGGTGgtaggtatca ... gttcttgcagTGTTTATTATGATATATAGCTGAAGCTATCATTTATCTTGCCTCCATAGTC
EST: AAGGTTCCCTCAGTACTATGAGGCATACTATGAGTTGGTG TGTTTATTATGATATATAGCTGAAGCTATCATTTATCTTGCCTCCATAGTCEST: gi|37394180|gb|CF634361.1|CF634361
genomic: AAGGTTCCCTCAGTACTATGAGGCATACTATGAGTTGGTGgtaggtatca ... gttcttgcagTGTTTATTATGATATATAGCTGAAGCTATCATTTATCTTGCCTCCATAGTC
EST: GAGCTAAAGCAAGGTTCCCTCAGTACTATGAGGCATACTATGAGTTGGTG TGTTTATTATGATATATAGCTGAAGCTATCATTTCATCTTGCCTCCATAGT
genomic: GAGCTAAAGCAAGGTTCCCTCAGTACTATGAGGCATACTATGAGTTGGTGgtaggtatca ... gttcttgcagTGTTTATTATGATATATAGCTGAAGCTATCATTT-ATCTTGCCTCCATAGT
catattattttgttgttagcttacaatagaaagtagctgtttttggttcttgcagTGTTTATTATGATATATAGCTGAAGCTATCATTTATCTTGCCTCCATAGTCTGCTGGTGTGCAATTTTCAAATCGGCCAAATGTTCTTGTCACACGAGCA
agcttac putative branch site (score: 4)
ttcttgc putative PPT
tattttgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ccacttctatggctccaatatctgcagcacattccttctcttgaacatattattttgttgttagcttacaatagaaagtagctgtttttggttcttgcagTGTTTATTATGATATATAGCTGAAGCTATCATTTATCTTGCCTCCATAGTCTGCTGGTGTGCAATTTTCAAATCGGCCAAATGTTCTTGTCACACGAGCA
ccacttc
- - - - - -gctccaa
- - - - - - - - - - -ctgcagc
- - - - - - - - - - - - - - -cattcct
- - - - - - - - - - - - - - - - - - - - - gaacata
- - - - - - - - - - - - - - - - - - - - - - - - - - - -tgttgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aatagaaa