Skip to another splice site:
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaacttatttttcactgaatttattatggcaattgtgaaacctgttctcatttggaacttcaccaattggtcttgacgtaacacactatcttggttgcagACGGATTTACCAGTTCGAGAAAAAATATTTCTTCTGTTAGATGCAACACAAACATCCCTTGGTGGAGCTAAAGCAAGGTTCCCTCAGTACTATGAGGCAT

Basic information

species Zea mays
transcript GRMZM5G834205_T02
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G834205_T01 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os08g01740.2 (Oryza sativa), 3'ss of exon 4
gtaacttatttttcactgaatttattatggcaattgtgaaacctgttctcatttggaacttcaccaattggtcttgacgtaacacactatcttggttgcagACGGATTTACCAGTTCGAGAAAAAATATTTCTTCTGTTAGATGCAACACAAACATCCCTTGGTGGAGCTAAAGCAAGGTTCCCTCAGTACTATGAGGCAT
|| | || || |    |   |||    ||| | |||                  ||||  |     |  | | ||||| ||||| |||||||   || ||||| || ||||||||||| ||||||||||||||| || | ||||| || ||||||||||||||||||| |||||  |  |||||||||||||||| |||||
gtgatttgttctcttttctttttccc-tggaagttgga----------------ggaaggttgttga--gatgttgacttaacatactatctgtatttcagACAGAATTACCAGTTCGTGAAAAAATATTTCTTTTGCTGGATGCGACCCAAACATCCCTTGGTGGAGTTAAAGGGAAATTCCCTCAGTACTATGGGGCAT

upper sequence: GRMZM5G834205_T01 (Zea mays), 3'ss of exon 3
lower sequence: GLYMA05G33150.1 (Glycine max), 3'ss of exon 5
gtaacttatttttcactgaatttattatggcaattgtgaaacctgttctcatttggaacttcaccaattgg-tcttgacgtaacacactatcttggt-tgcagACGGATTTACCAGTTCGAGAAAAAATATTTCTTCTGTTAGATGCAACACAAACATCCCTTGGTGGAGCTAAAGCAAGGTTCCCTCAGTACTATGAGGCAT
|| | || || | |||      |||| |  |  | |  ||     || ||||||     |||   ||| |  |||     |       |  |||||  ||||| | ||||| || ||  | ||    |||||||| || |||||||| |||||||||||||||||||| |||   | || ||| || ||||| ||| | ||||
gtgagtttttctccacactgactattgtt-ctttagcaaagttatttttcattt----tttccttaatcgtctctctctctcttttttttccttggcatgcagTCAGATTTGCCTGTAAGGGAGCGGATATTTCTCCTATTAGATGCCACACAAACATCCCTTGGTGGTGCTTCTGGAAAGTTTCCACAGTATTATAATGCAT

upper sequence: GRMZM5G834205_T01 (Zea mays), 3'ss of exon 3
lower sequence: GLYMA06G16740.1 (Glycine max), 3'ss of exon 5
gtaacttatttttcactgaatttattatggcaattgtgaaacctgttctcatttggaacttcaccaattggtcttgacgtaacacactatcttggttgcagACGGATTTACCAGTTCGAGAAAAAATATTTCTTCTGTTAGATGCAACACAAACATCCCTTGGTGGAGCTAAAGCAAGGTTCCCTCAGTACTATGAGGCAT
|| | || || | |||  |   |  | |     | |      | ||| |  ||   ||| ||||   ||  |  |  ||        |   |||||||||| | ||||| || ||  | ||    |||||||| ||  ||||||| |||||||||||||||||||| ||    | || ||| || ||||| ||| | ||||
gtgagtt-ttctccacaaagacttctgttatt-tagcattgtcagtttttctt---aacctcacttttttattctctcg--------ttctttggttgcagTCTGATTTGCCTGTGAGGGAGCGGATATTTCTCCTACTAGATGCCACACAAACATCCCTTGGTGGTGCATCTGGAAAGTTTCCACAGTATTATAATGCAT

upper sequence: GRMZM5G834205_T01 (Zea mays), 3'ss of exon 3
lower sequence: Vv07s0031g03190.t01 (Vitis vinifera), 3'ss of exon 3
gtaacttatttttcactgaatttattatggcaattgtgaaacctgttctcatttggaacttcaccaattggtcttgacgtaacacactatcttggttgcagACGGATTTACCAGTTCGAGAAAAAATATTTCTTCTGTTAGATGCAACACAAACATCCCTTGGTGGAGCTAAAGCAAGGTTCCCTCAGTACTATGAGGCAT
                 |  ||| ||    |||       |  | |   ||||      ||    | |||    | |  |  |  |   | |   |  ||||| || || || || ||||| || ||||||||||| |||||||| ||||| ||||| ||||||||||||   |||| ||||||||| |||||    ||||
-----------------gtgtttttttccccaagaacatgatttctggccattaactgtttt--tagttgaagctaaatttgcttatcttttctctcacagACAGACTTGCCCGTACGAGAGAAGATATTTCTTCTTTTAGATGCCACACAGACATCACTTGGTGGAGCTTCTGCAAAGTTCCCTCAATACTACAGTGCAT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211276227|gb|FL230642.1|FL230642
EST:     TCATTGATAATGGCCTTCTTCCAATACTTGTGAAGATAGTGAAGAAAAAG                         ACGGATTTACCAGTTCGAGAAAAAATATGTCTTCTGTTAGATGCAACACAA
genomic: TCATTGATAATGGCCTTCTTCCAATACTTGTGAAGATAGTGAAGAAAAAGgtaacttatt ... ttggttgcagACGGATTTACCAGTTCGAGAAAAAATATTTCTTCTGTTAGATGCAACACAA
EST: gi|149079652|gb|EE168649.2|EE168649
EST:     TCATTGATAATGCCCTTCTTCCAATACTTGTGAAGATAGTGAAGAAAAAG                         ACGGATTTACCAGTTCGAGAAAAAATATTTCTTCTGTTAGATGCAACACAA
genomic: TCATTGATAATGGCCTTCTTCCAATACTTGTGAAGATAGTGAAGAAAAAGgtaacttatt ... ttggttgcagACGGATTTACCAGTTCGAGAAAAAATATTTCTTCTGTTAGATGCAACACAA
EST: gi|78116689|gb|DV535076.1|DV535076
EST:     TCATTGATAATGGCCTTCTTCCAATACTTGTGAAGATAGTGAAGAAAAAG                         ACGGATTTACCAGTTCGAGAAAAAATATTTCTTCTGTTAGATGCAACACAA
genomic: TCATTGATAATGGCCTTCTTCCAATACTTGTGAAGATAGTGAAGAAAAAGgtaacttatt ... ttggttgcagACGGATTTACCAGTTCGAGAAAAAATATTTCTTCTGTTAGATGCAACACAA
EST: gi|93015304|gb|EB640824.1|EB640824
EST:     TCATTGATAATGGCCTTCTTCCAATACTTGTGAAGATAGTGAAGAAAAAG                         ACGGATTTACCAGTTCGAGAAAAAATATTTCTTCTGTTAGATGCAACACAA
genomic: TCATTGATAATGGCCTTCTTCCAATACTTGTGAAGATAGTGAAGAAAAAGgtaacttatt ... ttggttgcagACGGATTTACCAGTTCGAGAAAAAATATTTCTTCTGTTAGATGCAACACAA
EST: gi|93015622|gb|EB641142.1|EB641142
EST:     TCATTGATAATGGCCTTCTTCCAATACTTGTGAAGATAGTGAAGAAAAAG                         ACGGATTTACCAGTTCGAGAAAAAATATTTCTTCTGTTAGATGCAACACAA
genomic: TCATTGATAATGGCCTTCTTCCAATACTTGTGAAGATAGTGAAGAAAAAGgtaacttatt ... ttggttgcagACGGATTTACCAGTTCGAGAAAAAATATTTCTTCTGTTAGATGCAACACAA
EST: gi|149083864|gb|EE173239.2|EE173239
EST:     TCATTGATAATGGCCTTCTTCCAATACTTGTGAAGATAGTGAAGAAAAAG                         ACGGATTTACCAGTTCGAGAAAAAATATTTCTTCTGTTAGATGCAACACAA
genomic: TCATTGATAATGGCCTTCTTCCAATACTTGTGAAGATAGTGAAGAAAAAGgtaacttatt ... ttggttgcagACGGATTTACCAGTTCGAGAAAAAATATTTCTTCTGTTAGATGCAACACAA
EST: gi|71428013|gb|DR809063.1|DR809063
EST:     TCATTGATAATGGCCTTCTTCCAATACTTGTGAAGATAGTGAAGAAAAAG                         ACGGATTTACCAGTTCGAGAAAAAATATTTCTTCTGTTAGATGCAACACAA
genomic: TCATTGATAATGGCCTTCTTCCAATACTTGTGAAGATAGTGAAGAAAAAGgtaacttatt ... ttggttgcagACGGATTTACCAGTTCGAGAAAAAATATTTCTTCTGTTAGATGCAACACAA
EST: gi|89250673|gb|DY622459.1|DY622459
EST:     TCATTGATAATGGCCTTCTTCCAATACTTGTGAAGATAGTGAAGAAAAAG                         ACGGATTTACCAGTTCGAGAAAAAATATTTCTTCTGTTAGATGCAACACAA
genomic: TCATTGATAATGGCCTTCTTCCAATACTTGTGAAGATAGTGAAGAAAAAGgtaacttatt ... ttggttgcagACGGATTTACCAGTTCGAGAAAAAATATTTCTTCTGTTAGATGCAACACAA
EST: gi|9953455|gb|BE640038.1|BE640038
EST:     TCATTGATAATGGCCTTCTTCCAATACTTGTGAAGATAGTGAAGAAAAAG                         ACGGATTTACCAGTTCGAGAAAAAATATTTCTTCTGTTAGATGCAACACAA
genomic: TCATTGATAATGGCCTTCTTCCAATACTTGTGAAGATAGTGAAGAAAAAGgtaacttatt ... ttggttgcagACGGATTTACCAGTTCGAGAAAAAATATTTCTTCTGTTAGATGCAACACAA
EST: gi|74245588|gb|DT653502.1|DT653502
EST:     TCATTGATAATGGCCTTCTTCCAATACTTGTGAAGATAGTGAAGAAAAAG                         ACGGATTTACCAGTTCGAGAAAAAATATTTCTTCTGTTAGATGCAACACAA
genomic: TCATTGATAATGGCCTTCTTCCAATACTTGTGAAGATAGTGAAGAAAAAGgtaacttatt ... ttggttgcagACGGATTTACCAGTTCGAGAAAAAATATTTCTTCTGTTAGATGCAACACAA
EST: gi|78107222|gb|DV525640.1|DV525640
EST:     TCATTGATAATGGCCTTCTTCCAATACTTGTGAAGATAGTGAAGAAAAAG                         ACGGATTTACCAGTTCGAGAAAAAATATTTCTTCTGTTAGATGCAACACAA
genomic: TCATTGATAATGGCCTTCTTCCAATACTTGTGAAGATAGTGAAGAAAAAGgtaacttatt ... ttggttgcagACGGATTTACCAGTTCGAGAAAAAATATTTCTTCTGTTAGATGCAACACAA
EST: gi|71421501|gb|DR805467.1|DR805467
EST:     TCATTGATAATGGCCTTCTTCCAATACTTGTGAAGATAGTGAAGAAAAAG                         ACGGATTTACCAGTTCGAGAAAAAATATTTCTTCTGTTAGATGCAACACAA
genomic: TCATTGATAATGGCCTTCTTCCAATACTTGTGAAGATAGTGAAGAAAAAGgtaacttatt ... ttggttgcagACGGATTTACCAGTTCGAGAAAAAATATTTCTTCTGTTAGATGCAACACAA
EST: gi|149083865|gb|EE173240.2|EE173240
EST:     TCATTGATAATGGCCTTCTTCCAATACTTGTGAAGATAGTGAAGAAAAAG                         ACGGATTTACCAGTTCGAGAAAAAATATTTCTTCTGTT
genomic: TCATTGATAATGGCCTTCTTCCAATACTTGTGAAGATAGTGAAGAAAAAGgtaacttatt ... ttggttgcagACGGATTTACCAGTTCGAGAAAAAATATTTCTTCTGTT
EST: gi|211276223|gb|FL230638.1|FL230638
EST:     TCATTGATAATGGCCTTCTTCCAATACTTGTGAAGATAGTGAAGAAAAAG                         ACGGATTTACCAGTTCGAGAAAAAATATTTCTTCTGTTAGATGCAACACAA
genomic: TCATTGATAATGGCCTTCTTCCAATACTTGTGAAGATAGTGAAGAAAAAGgtaacttatt ... ttggttgcagACGGATTTACCAGTTCGAGAAAAAATATTTCTTCTGTTAGATGCAACACAA
EST: gi|149079653|gb|EE168650.2|EE168650
EST:     TCATTGATAATGGCCTTCTTCCAATACTTGTGAAGATAGTGAAGAAAAAG                         ACGGATTTACCAGTTCGAGAAAAAATATTTCTTCTGTTAGATGCAACACAA
genomic: TCATTGATAATGGCCTTCTTCCAATACTTGTGAAGATAGTGAAGAAAAAGgtaacttatt ... ttggttgcagACGGATTTACCAGTTCGAGAAAAAATATTTCTTCTGTTAGATGCAACACAA
EST: gi|149088094|gb|EE177262.2|EE177262
EST:     TCATTGATAATGGCCTTCTTCCAATACTTGTGAAGATAGTGAAGAAAAAG                         ACGGATTTACCAGTTCGAGAAAAAATATTTCTTCTGTTAGATGCAACACAA
genomic: TCATTGATAATGGCCTTCTTCCAATACTTGTGAAGATAGTGAAGAAAAAGgtaacttatt ... ttggttgcagACGGATTTACCAGTTCGAGAAAAAATATTTCTTCTGTTAGATGCAACACAA
EST: gi|93015305|gb|EB640825.1|EB640825
EST:     TCATTGATAATGGCCTTCTTCCAATACTTGTGAAGATAGTGAAGAAAAAG                         ACGGATTTACCAGTTCGAGAAAAAATATTTCTTCTGTTATATGCAACACAA
genomic: TCATTGATAATGGCCTTCTTCCAATACTTGTGAAGATAGTGAAGAAAAAGgtaacttatt ... ttggttgcagACGGATTTACCAGTTCGAGAAAAAATATTTCTTCTGTTAGATGCAACACAA
EST: gi|149102741|gb|EE288090.2|EE288090
EST:     TCATTGATAATGGCCTTCTTCCAATACTTGTGAAGATAGTGAAGAAAAAG                         ACGGATTTACCAGTTCGAGAAAAAATATTTCTTCTGTTAGATGCAACACAA
genomic: TCATTGATAATGGCCTTCTTCCAATACTTGTGAAGATAGTGAAGAAAAAGgtaacttatt ... ttggttgcagACGGATTTACCAGTTCGAGAAAAAATATTTCTTCTGTTAGATGCAACACAA
EST: gi|71320275|gb|DR796886.1|DR796886
EST:     TCATTGATAATGCCCTTCTTCCAATACTTGTGAAGATAGTGAAGAAAAAG                         ACGGATTTACCAGTTCGAGAAAAAATATTTCTTCTGTTAGATGCAACACAA
genomic: TCATTGATAATGGCCTTCTTCCAATACTTGTGAAGATAGTGAAGAAAAAGgtaacttatt ... ttggttgcagACGGATTTACCAGTTCGAGAAAAAATATTTCTTCTGTTAGATGCAACACAA
EST: gi|76291818|gb|DV031386.1|DV031386
EST:     TCATTGATAATGGCCTTCTTCCAATACTTGTGAAGATAGTGAAGAAAAAG                         ACGGATTTACCAGTTCGAGAAAAAATATTTCTTCTGTTAGATGCAACACAA
genomic: TCATTGATAATGGCCTTCTTCCAATACTTGTGAAGATAGTGAAGAAAAAGgtaacttatt ... ttggttgcagACGGATTTACCAGTTCGAGAAAAAATATTTCTTCTGTTAGATGCAACACAA
EST: gi|88752284|gb|DY536425.1|DY536425
EST:     TCATTGATAATGGCCTTCTTCCAATACTTGTGAAGATAGTGAAGAAAAAG                         ACGGATTTACCAGTTCGAGAAAAAATATTTCTTCT
genomic: TCATTGATAATGGCCTTCTTCCAATACTTGTGAAGATAGTGAAGAAAAAGgtaacttatt ... ttggttgcagACGGATTTACCAGTTCGAGAAAAAATATTTCTTCT
EST: gi|78116688|gb|DV535075.1|DV535075
EST:     TCATTGATAATGGCCTTCTTCCAATACTTGTGAAGATAGTGAAGAAAAAG                         ACGGATTTACCAGTTCGAGAAAAAATATTTCTTCTGTTAGATGCAACACAA
genomic: TCATTGATAATGGCCTTCTTCCAATACTTGTGAAGATAGTGAAGAAAAAGgtaacttatt ... ttggttgcagACGGATTTACCAGTTCGAGAAAAAATATTTCTTCTGTTAGATGCAACACAA
EST: gi|76281750|gb|DV021318.1|DV021318
EST:     TCATTGATAATGGCCTTCTTCCAATACTTGTGAAGATAGTGAAGAAAAAG                         ACGGATTTACCAGTTCGAGAAAAAATATTTCTTCTGTTAGATGCAACACAA
genomic: TCATTGATAATGGCCTTCTTCCAATACTTGTGAAGATAGTGAAGAAAAAGgtaacttatt ... ttggttgcagACGGATTTACCAGTTCGAGAAAAAATATTTCTTCTGTTAGATGCAACACAA
EST: gi|76282167|gb|DV021735.1|DV021735
EST:     TCATTGATAATGGCCTTCTTCCAATACTTGTGAAGATAGTGAAGAAAAAG                         ACGGATTTACCAGTTCGAGAAAAAATATTTCTTCTGTTAGATGCAACACAA
genomic: TCATTGATAATGGCCTTCTTCCAATACTTGTGAAGATAGTGAAGAAAAAGgtaacttatt ... ttggttgcagACGGATTTACCAGTTCGAGAAAAAATATTTCTTCTGTTAGATGCAACACAA
EST: gi|76924364|gb|DV169917.1|DV169917
EST:     TCATTGATAATGGCCTTCTTCCAATACTTGTGAAGATAGTGAAGAAAAAG                         ACGGATTTACCAGTTCGAGAAAAAATATTTCTTCTGTTAGATGCAACACAA
genomic: TCATTGATAATGGCCTTCTTCCAATACTTGTGAAGATAGTGAAGAAAAAGgtaacttatt ... ttggttgcagACGGATTTACCAGTTCGAGAAAAAATATTTCTTCTGTTAGATGCAACACAA
EST: gi|148952812|gb|EC898804.2|EC898804
EST:     TCATTGATAATGGCCTTCTTCCAATACTTGTGAAGATAGTGAAGAAAAAG                         ACGGATTTACCAGTTCGAGAAAAAATATTTCTTCTGTTAGATGCAACACAA
genomic: TCATTGATAATGGCCTTCTTCCAATACTTGTGAAGATAGTGAAGAAAAAGgtaacttatt ... ttggttgcagACGGATTTACCAGTTCGAGAAAAAATATTTCTTCTGTTAGATGCAACACAA
EST: gi|76021099|gb|DT948269.1|DT948269
EST:     TCATTGATAATGGCCTTCTTCCAATACTTGTGAAGATAGTGAAGAAAAAG                         ACGGATTTACCAGTTCGAGAAAAAATATGTCTTCTGTTAGATGCAACACAA
genomic: TCATTGATAATGGCCTTCTTCCAATACTTGTGAAGATAGTGAAGAAAAAGgtaacttatt ... ttggttgcagACGGATTTACCAGTTCGAGAAAAAATATTTCTTCTGTTAGATGCAACACAA
EST: gi|71326004|gb|DR799684.1|DR799684
EST:     TCATTGATAATGGCCTTCTTCCAATACTTGTGAAGATAGTGAAGAAAAAG                         ACGGATTTACCAGTTCGAGAAAAAATATCTCTTCTGTTAGATGCAACACAA
genomic: TCATTGATAATGGCCTTCTTCCAATACTTGTGAAGATAGTGAAGAAAAAGgtaacttatt ... ttggttgcagACGGATTTACCAGTTCGAGAAAAAATATTTCTTCTGTTAGATGCAACACAA
EST: gi|149105966|gb|EE291599.2|EE291599
EST:     TCATTGATAATGGCCTTCTTCCAATACTTGTGAAGATAGTGAAGAAAAAG                         ACGGATTTACCAGTTCGAGAAAAAATATTTCTTCTGTTAGATGCAACACAA
genomic: TCATTGATAATGGCCTTCTTCCAATACTTGTGAAGATAGTGAAGAAAAAGgtaacttatt ... ttggttgcagACGGATTTACCAGTTCGAGAAAAAATATTTCTTCTGTTAGATGCAACACAA
EST: gi|76924362|gb|DV169916.1|DV169916
EST:     TCATTGATAATGGCCTTCTTCCAATACTTGTGAAGATAGTGAAGAAAAAG                         ACGGATTTACCAGTTCGAGAAAAAATATTTCTTCTGTTAGATGCAACACAA
genomic: TCATTGATAATGGCCTTCTTCCAATACTTGTGAAGATAGTGAAGAAAAAGgtaacttatt ... ttggttgcagACGGATTTACCAGTTCGAGAAAAAATATTTCTTCTGTTAGATGCAACACAA
EST: gi|89249854|gb|DY621640.1|DY621640
EST:     TCATTGATAATGGCCTTCTTCCAATACTTGTGAAGATAGTGAAGAAAAAG                         ACGGATTTACCAGTTCGAGAAAAAATATTTCTTCTGTTAGATGCAACACAA
genomic: TCATTGATAATGGCCTTCTTCCAATACTTGTGAAGATAGTGAAGAAAAAGgtaacttatt ... ttggttgcagACGGATTTACCAGTTCGAGAAAAAATATTTCTTCTGTTAGATGCAACACAA
EST: gi|71428014|gb|DR809064.1|DR809064
EST:     TCATTGATAATGGCCTTCTTCCAATACTTGTGAAGATAGTGAAGAAAAAG                         ACGGATTTACCAGTTCGAGAAAAAATATTTCTTCTGTTAGATGCAACACAA
genomic: TCATTGATAATGGCCTTCTTCCAATACTTGTGAAGATAGTGAAGAAAAAGgtaacttatt ... ttggttgcagACGGATTTACCAGTTCGAGAAAAAATATTTCTTCTGTTAGATGCAACACAA
EST: gi|149102742|gb|EE288091.2|EE288091
EST:     TCATTGATAATGGCCTTCTTCCAATACTTGTGAAGATAGTGAAGAAAAAG                         ACGGATTTACCAGTTCGAGAAAAAATATTTCTTCTGTTAGATGCAACACAA
genomic: TCATTGATAATGGCCTTCTTCCAATACTTGTGAAGATAGTGAAGAAAAAGgtaacttatt ... ttggttgcagACGGATTTACCAGTTCGAGAAAAAATATTTCTTCTGTTAGATGCAACACAA
EST: gi|149085134|gb|EE174639.2|EE174639
EST:     TCATTGATAATGGCCTTCTTCCAATACTTGTGAAGATAGTGAAGAAAAAG                         ACGGATTTACCAGTTCGAGAAAAAATATTTCTTCTGTTAGATGCAACACAA
genomic: TCATTGATAATGGCCTTCTTCCAATACTTGTGAAGATAGTGAAGAAAAAGgtaacttatt ... ttggttgcagACGGATTTACCAGTTCGAGAAAAAATATTTCTTCTGTTAGATGCAACACAA
EST: gi|76927739|gb|DV171347.1|DV171347
EST:     TCATTGATAATGGCCTTCTTCCAATACTTGTGAAGATAGTGAAGAAAAAG                         ACGGATTTACCAGTTCGAGAAAAAATATTTCTTCTGTTAGATGCAACACAA
genomic: TCATTGATAATGGCCTTCTTCCAATACTTGTGAAGATAGTGAAGAAAAAGgtaacttatt ... ttggttgcagACGGATTTACCAGTTCGAGAAAAAATATTTCTTCTGTTAGATGCAACACAA
EST: gi|86465690|gb|DY232063.1|DY232063
EST:     ACATTGATAATGGCCTTCTTCCAATACTTGTGAAGATAGTGAAGAAAAAG                         ACGGATTTACCAGTTCGAGAAAAAATATT
genomic: TCATTGATAATGGCCTTCTTCCAATACTTGTGAAGATAGTGAAGAAAAAGgtaacttatt ... ttggttgcagACGGATTTACCAGTTCGAGAAAAAATATT
EST: gi|76282168|gb|DV021736.1|DV021736
EST:     TCATTGATAATGGCCTTCTTCCAATACTTGTGAAGATAGTGNNNNNNNNG                         ACGGATTTACCAGTTCGAGAAAAAATATTTCTTCTGTTAGATGCAACACA
genomic: TCATTGATAATGGCCTTCTTCCAATACTTGTGAAGATAGTGAAGAAAAAGgtaacttatt ... ttggttgcagACGGATTTACCAGTTCGAGAAAAAATATTTCTTCTGTTAGATGCAACACA
EST: gi|149088092|gb|EE287276.2|EE287276
EST:     TCATTGATAATGGCCTTCTTCCAATACTTGTGAAGATAGTGAAGAAAAAG                         ACGGATTTACCAGTTCGAGAAAAAATATTTCTTCTGTTAGATGCAACACAA
genomic: TCATTGATAATGGCCTTCTTCCAATACTTGTGAAGATAGTGAAGAAAAAGgtaacttatt ... ttggttgcagACGGATTTACCAGTTCGAGAAAAAATATTTCTTCTGTTAGATGCAACACAA
EST: gi|71326005|gb|DR799685.1|DR799685
EST:     TCATTGATAATGGCCTTCTTCCAATACTTGTGAAGATAGTGAAGAAAAAG                         ACGGATTTACCAGTTCGAGAAAAAATATTTCTTCTGTTAGATGCAACACAA
genomic: TCATTGATAATGGCCTTCTTCCAATACTTGTGAAGATAGTGAAGAAAAAGgtaacttatt ... ttggttgcagACGGATTTACCAGTTCGAGAAAAAATATTTCTTCTGTTAGATGCAACACAA
EST: gi|149059924|gb|EE157051.2|EE157051
EST:     TCATTGATAATGGCCTTCTTCCAATACTTGTGAAGATAGTGAAGAAAAAG                         ACGGATTTACCAGTTCGAGAAAAAATATTTCTTCTGTTAGATGCAACACAA
genomic: TCATTGATAATGGCCTTCTTCCAATACTTGTGAAGATAGTGAAGAAAAAGgtaacttatt ... ttggttgcagACGGATTTACCAGTTCGAGAAAAAATATTTCTTCTGTTAGATGCAACACAA
EST: gi|86472431|gb|DY238801.1|DY238801
EST:     TCATTGATAATGGCCTTCTTCCAATACTTGTGAAGATAGTGAAGAAAAAG                         ACGGATTTACCAGTTCGAGAAAAAATATTTCTTCTGTTAGATGCAACACAA
genomic: TCATTGATAATGGCCTTCTTCCAATACTTGTGAAGATAGTGAAGAAAAAGgtaacttatt ... ttggttgcagACGGATTTACCAGTTCGAGAAAAAATATTTCTTCTGTTAGATGCAACACAA
EST: gi|74245587|gb|DT653501.1|DT653501
EST:     TCATTGATAATGGCCTTCTTCCAATACTTGTGAAGATAGTGAAGAAAAAG                         ACGGATTTACCAGTTCGAGAAAAAATATTTCTTCTGTTAGATGCAACACAA
genomic: TCATTGATAATGGCCTTCTTCCAATACTTGTGAAGATAGTGAAGAAAAAGgtaacttatt ... ttggttgcagACGGATTTACCAGTTCGAGAAAAAATATTTCTTCTGTTAGATGCAACACAA
EST: gi|78091790|gb|DV520164.1|DV520164
EST:     TCATTGATAATGACCTTCTTCCAATACTTGTGAAGATAGTGAAGAAAAAG                         ACGGATTTACCAGTTCGAGAAAAAATATTTCTTCTGTTAGATGCAACACAA
genomic: TCATTGATAATGGCCTTCTTCCAATACTTGTGAAGATAGTGAAGAAAAAGgtaacttatt ... ttggttgcagACGGATTTACCAGTTCGAGAAAAAATATTTCTTCTGTTAGATGCAACACAA
EST: gi|149085242|gb|EE174748.2|EE174748
EST:     TCATTGATAATGGCCTTCTTCCAATACTTGTGAAGATAGTGAAGAAAAAG                         ACGGATTTACCAGTTCGAGAAAAAATATTTCTTCTGTTAGATGCAACACAA
genomic: TCATTGATAATGGCCTTCTTCCAATACTTGTGAAGATAGTGAAGAAAAAGgtaacttatt ... ttggttgcagACGGATTTACCAGTTCGAGAAAAAATATTTCTTCTGTTAGATGCAACACAA
EST: gi|76281749|gb|DV021317.1|DV021317
EST:     TCATTGATAATGGCCTTCTTCCAATACTTGTGAAGATAGTGAAGAAAAAG                         ACGGATTTACCAGTTCGAGAAAAAATATTTCTTCTGTTAGATGCAACACAA
genomic: TCATTGATAATGGCCTTCTTCCAATACTTGTGAAGATAGTGAAGAAAAAGgtaacttatt ... ttggttgcagACGGATTTACCAGTTCGAGAAAAAATATTTCTTCTGTTAGATGCAACACAA
EST: gi|71421504|gb|DR805468.1|DR805468
EST:     TCATTGATAATGGCCTTCTTCCAATACTTGTGAAGATAGTGAAGAAAAAG                         ACGGATTTACCAGTTCGAGAAAAAATATTTCTTCTGTTAGATGCAACACAA
genomic: TCATTGATAATGGCCTTCTTCCAATACTTGTGAAGATAGTGAAGAAAAAGgtaacttatt ... ttggttgcagACGGATTTACCAGTTCGAGAAAAAATATTTCTTCTGTTAGATGCAACACAA
EST: gi|149105965|gb|EE291598.2|EE291598
EST:     TCATTGATAATGGCCTTCTTCCAATACTTGTGAAGATAGTGAAGAAAAAG                         ACGGATTTACCAGTTCGAGAAAAAATATTTCTTCTGTTAGATGCAACACAA
genomic: TCATTGATAATGGCCTTCTTCCAATACTTGTGAAGATAGTGAAGAAAAAGgtaacttatt ... ttggttgcagACGGATTTACCAGTTCGAGAAAAAATATTTCTTCTGTTAGATGCAACACAA
EST: gi|149095623|gb|EE174749.2|EE174749
EST:     TCATTGATAATGGCCTTCTTCCAATACTTGTGAAGATAGTGAAGAAAAAG                         ACGGATTTACCAGTTCGAGAAAAAATATTTCTTCTGTTAGATGCAACACAA
genomic: TCATTGATAATGGCCTTCTTCCAATACTTGTGAAGATAGTGAAGAAAAAGgtaacttatt ... ttggttgcagACGGATTTACCAGTTCGAGAAAAAATATTTCTTCTGTTAGATGCAACACAA
EST: gi|101391434|gb|EB817652.1|EB817652
EST:     TCATTGATAATGGCCTTCTTCCAATACTTGTGAAGATAGTGAAGAAAAAG                         ACGGATTTACCAGTTCGAGAAAAAATATTTCTTCTGTTAGATGCAACACAA
genomic: TCATTGATAATGGCCTTCTTCCAATACTTGTGAAGATAGTGAAGAAAAAGgtaacttatt ... ttggttgcagACGGATTTACCAGTTCGAGAAAAAATATTTCTTCTGTTAGATGCAACACAA
EST: gi|93017402|gb|EB642922.1|EB642922
EST:     TCATTGATAATGGCCTTCTTCCAATACTTGTGAAGATAGTGAAGAAAAAG                         ACGGA-TTACCCAGTTCGAGAAAAAATATTTCTTCTGTTAGATGCAACACA
genomic: TCATTGATAATGGCCTTCTTCCAATACTTGTGAAGATAGTGAAGAAAAAGgtaacttatt ... ttggttgcagACGGATTTA-CCAGTTCGAGAAAAAATATTTCTTCTGTTAGATGCAACACA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 281

CTATTGGAGATGCTTCTGAATAATTGCGGAGAGCCTGTCCATAGGCAGGTCATTGATAATGGCCTTCTTCCAATACTTGTGAAGATAGTGAAGAAAAAGgtaacttatt ... ttggttgcagACGGATTTACCAGTTCGAGAAAAAATATTTCTTCTGTTAGATGCAACACAAACATCCCTTGGTGGAGCTAAAGCAAGGTTCCCTCAGTACTATGAGGCAT


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 137

CTATTGGAGATGCTTCTGAATAATTGCGGAGAGCCTGTCCATAGGCAGGTCATTGATAATGGCCTTCTTCCAATACTTGTGAAGATAGTGAAGAAAAAGgtaacttatt ... ttggttgcagACGGATTTACCAGTTCGAGAAAAAATATTTCTTCTGTTAGATGCAACACAAACATCCCTTGGTGGAGCTAAAGCAAGGTTCCCTCAGTACTATGAGGCAT


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 168

CTATTGGAGATGCTTCTGAATAATTGCGGAGAGCCTGTCCATAGGCAGGTCATTGATAATGGCCTTCTTCCAATACTTGTGAAGATAGTGAAGAAAAAGgtaacttatt ... ttggttgcagACGGATTTACCAGTTCGAGAAAAAATATTTCTTCTGTTAGATGCAACACAAACATCCCTTGGTGGAGCTAAAGCAAGGTTCCCTCAGTACTATGAGGCAT


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 205

CTATTGGAGATGCTTCTGAATAATTGCGGAGAGCCTGTCCATAGGCAGGTCATTGATAATGGCCTTCTTCCAATACTTGTGAAGATAGTGAAGAAAAAGgtaacttatt ... ttggttgcagACGGATTTACCAGTTCGAGAAAAAATATTTCTTCTGTTAGATGCAACACAAACATCCCTTGGTGGAGCTAAAGCAAGGTTCCCTCAGTACTATGAGGCAT




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctcatttggaacttcaccaattggtcttgacgtaacacactatcttggttgcagACGGATTTACCAGTTCGAGAAAAAATATTTCTTCTGTTAGATGCAACACAAACATCCCTTGGTGGAGCTAAAGCAAGGTTCCCTCAGTACTATGAGGCAT
                              acgtaac  putative branch site (score: 205)
                                        ctatctt  putative PPT
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaacttatttttcactgaatttattatggcaattgtgaaacctgttctcatttggaacttcaccaattggtcttgacgtaacacactatcttggttgcagACGGATTTACCAGTTCGAGAAAAAATATTTCTTCTGTTAGATGCAACACAAACATCCCTTGGTGGAGCTAAAGCAAGGTTCCCTCAGTACTATGAGGCAT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG