1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...ttattttgttgttagcttacaatagaaagtagctgtttttggttcttgcagtgtttattatgatatatagctgaagctatcatttatcttgcctccatagTCTGCTGGTGTGCAATTTTCAAATCGGCCAAATGTTCTTGTCACACGAGCAGAAGTGCCAGTCCCAGAAACGAGAACAGAACCAAATAATGAAAGTTTAT
species | Zea mays |
transcript | GRMZM5G834205_T01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GAGCTAAAGCAAGGTTCCCTCAGTACTATGAGGCATACTATGAGTTGGTG TCTGCTGGTGTGCAATTTTCAAATCGGCCAAATGTTCTTGTCACACGAGCAEST: gi|78107223|gb|DV525641.1|DV525641
genomic: GAGCTAAAGCAAGGTTCCCTCAGTACTATGAGGCATACTATGAGTTGGTGgtaggtatca ... gcctccatagTCTGCTGGTGTGCAATTTTCAAATCGGCCAAATGTTCTTGTCACACGAGCA
EST: GAGCTAAAGCAAGGTTCCCTCAGTACTATGAGGCATACTATGAGTTGGTG TCTGCTGGTGTGCAATTTTTCAA-TCGGCCAAATGTTCTTGTCACACGAGCEST: gi|32837204|gb|CD976882.1|CD976882
genomic: GAGCTAAAGCAAGGTTCCCTCAGTACTATGAGGCATACTATGAGTTGGTGgtaggtatca ... gcctccatagTCTGCTGGTGTGCAATTTT-CAAATCGGCCAAATGTTCTTGTCACACGAGC
EST: ACTATGAGGCATACTATGAGTTGGTG TCTGCTGGTGTGCAATTTTCAAATCGGCCAAATGTTCTTGTCACACGAGCAEST: gi|149059924|gb|EE157051.2|EE157051
genomic: ACTATGAGGCATACTATGAGTTGGTGgtaggtatca ... gcctccatagTCTGCTGGTGTGCAATTTTCAAATCGGCCAAATGTTCTTGTCACACGAGCA
EST: GAGCTAAAGCAAGGTTCCCTCAGTACTATGAGGCATACTATGAGTTGGTG TCTGCTGGTGTGCAATTTTCAAATCGGCCAAATGTTCTTGTCACACGAGCAEST: gi|93015305|gb|EB640825.1|EB640825
genomic: GAGCTAAAGCAAGGTTCCCTCAGTACTATGAGGCATACTATGAGTTGGTGgtaggtatca ... gcctccatagTCTGCTGGTGTGCAATTTTCAAATCGGCCAAATGTTCTTGTCACACGAGCA
EST: GAGCTAAAGCAAGGTTCCCTCAATACTATGAGGCATACTATGAGTTGGCG TCTGCTGGTGTGCAATTTTCAAATCGGCCAAATGTTCTTGTCEST: gi|149088092|gb|EE287276.2|EE287276
genomic: GAGCTAAAGCAAGGTTCCCTCAGTACTATGAGGCATACTATGAGTTGGTGgtaggtatca ... gcctccatagTCTGCTGGTGTGCAATTTTCAAATCGGCCAAATGTTCTTGTC
EST: GAGCTAAAGCAAGGTTCCCTCAGTACTATGAGGCATACTATGAGTTGGTG TCTGCTGGTGTGCAATTTTCAAATCGGCCAAATGTTCTTGTCACACGAGCAEST: gi|9953455|gb|BE640038.1|BE640038
genomic: GAGCTAAAGCAAGGTTCCCTCAGTACTATGAGGCATACTATGAGTTGGTGgtaggtatca ... gcctccatagTCTGCTGGTGTGCAATTTTCAAATCGGCCAAATGTTCTTGTCACACGAGCA
EST: GAGCTAAAGCAAGGTTCCCTCAGTACTATGAGGCATACTATGAGTTGGTG TCTGCTGGTGTGCAATTTTCAAATCGGCCAAATGTTCTTGTCACACGAGCAEST: gi|71421504|gb|DR805468.1|DR805468
genomic: GAGCTAAAGCAAGGTTCCCTCAGTACTATGAGGCATACTATGAGTTGGTGgtaggtatca ... gcctccatagTCTGCTGGTGTGCAATTTTCAAATCGGCCAAATGTTCTTGTCACACGAGCA
EST: GAGCTAAAGCAAGGTTCCCTCAGTACTATGAGGCATACTATGAGTTGGTG TCTGCTGGTGTGCAATTTTCAAATCGGCCAAATGTTCTTGTCACACGAGCAEST: gi|71326005|gb|DR799685.1|DR799685
genomic: GAGCTAAAGCAAGGTTCCCTCAGTACTATGAGGCATACTATGAGTTGGTGgtaggtatca ... gcctccatagTCTGCTGGTGTGCAATTTTCAAATCGGCCAAATGTTCTTGTCACACGAGCA
EST: GAGCTAAAGCAAGGTTCCCTCAGTACTATGAGGCATACTATGAGTTGGTG TCTGCTGGTGTGCAATTTTCAAATCGGCCAAATGTTCTTGTCACACGAGCAEST: gi|78107222|gb|DV525640.1|DV525640
genomic: GAGCTAAAGCAAGGTTCCCTCAGTACTATGAGGCATACTATGAGTTGGTGgtaggtatca ... gcctccatagTCTGCTGGTGTGCAATTTTCAAATCGGCCAAATGTTCTTGTCACACGAGCA
EST: GAGCTAAAGCAAGGTTCCCTCAGTACTATGAGGCATACTATGAGTTGGTG TCTGCTGGTGTGCAATTTTCAAATCGGCCAAATGTTCTTGTCACACGAGCAEST: gi|50325446|gb|CO520572.1|CO520572
genomic: GAGCTAAAGCAAGGTTCCCTCAGTACTATGAGGCATACTATGAGTTGGTGgtaggtatca ... gcctccatagTCTGCTGGTGTGCAATTTTCAAATCGGCCAAATGTTCTTGTCACACGAGCA
EST: CTAAAGCAAGGTTCCCTCAGTACTATGAGGCATACTATGAGTTGGTG TCTGCTGGTGTGCAATTTTCAAATCGGCCAAATGTTCTTGTCACACGAGCAEST: gi|44682243|gb|CK787291.1|CK787291
genomic: CTAAAGCAAGGTTCCCTCAGTACTATGAGGCATACTATGAGTTGGTGgtaggtatca ... gcctccatagTCTGCTGGTGTGCAATTTTCAAATCGGCCAAATGTTCTTGTCACACGAGCA
EST: GAGCTAAAGCAAGGTTCCCTCAGTACTATGAGGCATACTATGAGCTGGTG TCTGCTGGTGTGCAATTTTCAAATCGGCCAAATGTTCTTGTCACACGAGCAEST: gi|148952813|gb|EC898805.2|EC898805
genomic: GAGCTAAAGCAAGGTTCCCTCAGTACTATGAGGCATACTATGAGTTGGTGgtaggtatca ... gcctccatagTCTGCTGGTGTGCAATTTTCAAATCGGCCAAATGTTCTTGTCACACGAGCA
EST: AGCTAAAAGCAAT-TTCCCTCAGTACTATGAGGCATACTATGAGTTGGTG TCTGCTGGTGTGCAATTTTCAAEST: gi|74245587|gb|DT653501.1|DT653501
genomic: AGCTAAA-GCAAGGTTCCCTCAGTACTATGAGGCATACTATGAGTTGGTGgtaggtatca ... gcctccatagTCTGCTGGTGTGCAATTTTCAA
EST: GAGCTAAAGCAAGGTTCCCTCAGTACTATGAGGCATACTATGAGTTGGTG TCTGCTGGTGTGCAATTTTCAAATCGGCCAAATGTTCTTGTCACACGAGCAEST: gi|149105965|gb|EE291598.2|EE291598
genomic: GAGCTAAAGCAAGGTTCCCTCAGTACTATGAGGCATACTATGAGTTGGTGgtaggtatca ... gcctccatagTCTGCTGGTGTGCAATTTTCAAATCGGCCAAATGTTCTTGTCACACGAGCA
EST: GAGCTAAAGCAAGGTTCCCTCAGTACTATGAGGCATACTATGAGTTGGTG TCTGCTGGTGTGCAATTTTCAAATCGGCCAAATGTTCTTGTCACACGAGCAEST: gi|71428013|gb|DR809063.1|DR809063
genomic: GAGCTAAAGCAAGGTTCCCTCAGTACTATGAGGCATACTATGAGTTGGTGgtaggtatca ... gcctccatagTCTGCTGGTGTGCAATTTTCAAATCGGCCAAATGTTCTTGTCACACGAGCA
EST: GAGCTAAAGCAAGGTTCCCTCAGTACTATGAGGCATACTATGAGTTGGTG TCTGCTGGTGTGCAATTTTCAAATCGGCCAAATGTTCTTGTCACACGAGCAEST: gi|211276223|gb|FL230638.1|FL230638
genomic: GAGCTAAAGCAAGGTTCCCTCAGTACTATGAGGCATACTATGAGTTGGTGgtaggtatca ... gcctccatagTCTGCTGGTGTGCAATTTTCAAATCGGCCAAATGTTCTTGTCACACGAGCA
EST: GAGCTAAAGCAAGGTTCCCTCAGTACTATGAGGCATACTATGAGTTGGTG TCTGCTGGTGTGCAATTTTCAAATCGGCCAAATGTTCTTGTCACACGAGCAEST: gi|71326004|gb|DR799684.1|DR799684
genomic: GAGCTAAAGCAAGGTTCCCTCAGTACTATGAGGCATACTATGAGTTGGTGgtaggtatca ... gcctccatagTCTGCTGGTGTGCAATTTTCAAATCGGCCAAATGTTCTTGTCACACGAGCA
EST: GAGCTAAAGCAAGGTTCCCTCAGTACTATGAGGCATACTATGAGTTGGTG TCTGCTGGTGTGCAATTTTCAAATCGGCCAAATGTTCTTGTCACACGAGCA
genomic: GAGCTAAAGCAAGGTTCCCTCAGTACTATGAGGCATACTATGAGTTGGTGgtaggtatca ... gcctccatagTCTGCTGGTGTGCAATTTTCAAATCGGCCAAATGTTCTTGTCACACGAGCA
ttgcagtgtttattatgatatatagctgaagctatcatttatcttgcctccatagTCTGCTGGTGTGCAATTTTCAAATCGGCCAAATGTTCTTGTCACACGAGCAGAAGTGCCAGTCCCAGAAACGAGAACAGAACCAAATAATGAAAGTTTAT
tttatcttgcctcc CT-rich tract
tgtttattatgatata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttattttgttgttagcttacaatagaaagtagctgtttttggttcttgcagtgtttattatgatatatagctgaagctatcatttatcttgcctccatagTCTGCTGGTGTGCAATTTTCAAATCGGCCAAATGTTCTTGTCACACGAGCAGAAGTGCCAGTCCCAGAAACGAGAACAGAACCAAATAATGAAAGTTTAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT