1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtgtatatccttccaagaactgatctcttgtattgccattctcctctagtcttgccctccgattttgatttcctttcctatctgtcgtcattccaaagTAGTGCGCTAGCCAATCTTCCAGACAGCTTGAAAGAGAAACTGGTGCCGGACGTCCAGTGCAGAGGGAAACTACAGGATCTGCACAGCTCCGTGCGAGAA
species | Zea mays |
transcript | GRMZM5G833593_T05 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CAATCTGTAAACGCTGGCTACAAGTGGGGCCTTGTTCGCGGGGTTGCCAG T-G--CGCTAGCCAATCTTCCAGACAGCTTGAAAGAGAAACTGGTGCCGGAEST: gi|71327087|gb|DR800190.1|DR800190
genomic: CAATCTGTAAACGCTGGCTACAAGTGGGGCCTTGTTCGCGGGGTTGCCAGgtgtatatcc ... cattccaaagTAGTGCGCTAGCCAATCTTCCAGACAGCTTGAAAGAGAAACTGGTGCCGGA
EST: CAATCTGTAAACGCTGGCTACAAGTGGGGCCTTGTTCGCGGGGTTGCC-- -AGTGCGCTAGCCAATCTTCCAGACAGCTTGAAAGAGAAACTGGTGCCGGAEST: gi|71448668|gb|DR829718.1|DR829718
genomic: CAATCTGTAAACGCTGGCTACAAGTGGGGCCTTGTTCGCGGGGTTGCCAGgtgtatatcc ... cattccaaagTAGTGCGCTAGCCAATCTTCCAGACAGCTTGAAAGAGAAACTGGTGCCGGA
EST: CAATCTGTAAACGCTGGCTACAAGTGGGGCCTTGTTCGCGGGGTTGCCAG TAGTGCGCTAGCCAATCTTCCAGACAGCTTGAAAGAGAAACTGGTGCCGGAEST: gi|76929776|gb|DV172157.1|DV172157
genomic: CAATCTGTAAACGCTGGCTACAAGTGGGGCCTTGTTCGCGGGGTTGCCAGgtgtatatcc ... cattccaaagTAGTGCGCTAGCCAATCTTCCAGACAGCTTGAAAGAGAAACTGGTGCCGGA
EST: CAATCTGTAAACGCTGGCTACAAGTGGGGCCTTGTTCGCGGGGTTGCCAG T-G--CGCTTGCCAATCTTCCAGACAGCTTGAAAGAGAAACTGGGGCCGGAEST: gi|76934920|gb|DV174088.1|DV174088
genomic: CAATCTGTAAACGCTGGCTACAAGTGGGGCCTTGTTCGCGGGGTTGCCAGgtgtatatcc ... cattccaaagTAGTGCGCTAGCCAATCTTCCAGACAGCTTGAAAGAGAAACTGGTGCCGGA
EST: CAATCTGTAAACGCTGGCTACAAGTGGGGCCTTGTTCGCGGGGTTGCCAG T-G--CGCTAGCCAATCTTCCAGACAGCTTGAAAGAGAAACTGGTGCCGGAEST: gi|71771514|gb|DR969451.1|DR969451
genomic: CAATCTGTAAACGCTGGCTACAAGTGGGGCCTTGTTCGCGGGGTTGCCAGgtgtatatcc ... cattccaaagTAGTGCGCTAGCCAATCTTCCAGACAGCTTGAAAGAGAAACTGGTGCCGGA
EST: CAATCTGTAAACGCTGGCTACAAGTGGGGCCTTGTTCGCGGGGTTGCCAG T-G--CGCTAGCCAATCTTCCAGACAGCTTGAAAGAGAAACTGGTGCCGGAEST: gi|74234252|gb|DT642166.1|DT642166
genomic: CAATCTGTAAACGCTGGCTACAAGTGGGGCCTTGTTCGCGGGGTTGCCAGgtgtatatcc ... cattccaaagTAGTGCGCTAGCCAATCTTCCAGACAGCTTGAAAGAGAAACTGGTGCCGGA
EST: CAATCTGTAAACGCTGGCTACAAGTGGGGCCTTGTTCGCGGGGTTGCCAG T-G--CGCTAGCCAATCTTCCAGACAGCTTGAAAGAGAAACTGGTGCCGGAEST: gi|71774208|gb|DR972086.1|DR972086
genomic: CAATCTGTAAACGCTGGCTACAAGTGGGGCCTTGTTCGCGGGGTTGCCAGgtgtatatcc ... cattccaaagTAGTGCGCTAGCCAATCTTCCAGACAGCTTGAAAGAGAAACTGGTGCCGGA
EST: CAATCTGTAAACGCTGGCTACAAGTGGGGCCTTGTTCGCGGGGTTGCCAG T-G--CGCTAGCCAATCTTCCAGACAGCTTGAAAGAGAAACTGGTGCCGGA
genomic: CAATCTGTAAACGCTGGCTACAAGTGGGGCCTTGTTCGCGGGGTTGCCAGgtgtatatcc ... cattccaaagTAGTGCGCTAGCCAATCTTCCAGACAGCTTGAAAGAGAAACTGGTGCCGGA
ctctagtcttgccctccgattttgatttcctttcctatctgtcgtcattccaaagTAGTGCGCTAGCCAATCTTCCAGACAGCTTGAAAGAGAAACTGGTGCCGGACGTCCAGTGCAGAGGGAAACTACAGGATCTGCACAGCTCCGTGCGAGAA
ttttgat putative branch site (score: 3)
tttcctttcctatctg CT-rich tract
attttgattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgtatatccttccaagaactgatctcttgtattgccattctcctctagtcttgccctccgattttgatttcctttcctatctgtcgtcattccaaagTAGTGCGCTAGCCAATCTTCCAGACAGCTTGAAAGAGAAACTGGTGCCGGACGTCCAGTGCAGAGGGAAACTACAGGATCTGCACAGCTCCGTGCGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC