Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtaagatattcaaaaccatgtttcgttgttcgaacaaaatatttgttccgacgcgtttctttttccatgagtcgtggcatcaagaatcttggagtatttctccaccggtaaggatgagaacgtcgtcccactgatatccacccatgtgtgacagGTTAGTGTTCCTGAAGGAAAGAAAAGAGACCGGCGGAACGACCTGCTACTGATCCGTGACGGGGGTGAGTCTTTCAGAATCATCGACAAG

Basic information

species Zea mays
transcript GRMZM5G829928_T01
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G829928_T02 (Zea mays), 3'ss of exon 4
lower sequence: LOC_Os12g01950.1 (Oryza sativa), 3'ss of exon 4
gtaagtaagatattcaaaaccatgtttcgttgttcgaacaaaatatttgttccgacgcgtttctttttccatgagtcgtggcatcaagaatcttggagtatttctccaccggtaaggatgagaacgtcgtcccactgatatccacccatgtgtgacagGTTAGTGTTCCTGAAGGAAAGAAAAGAGACCGGCGGAACGACCTGCTACTGATCCGTGACGGGGGTGAGTCTTTCAGAATCATCGACAAG
                                      | | | ||||||  | | || ||| | ||  | |   |  | ||||        ||  | || || |      ||   |||              | ||||||| | |    | | |||||||||||| |||||||||||||| || ||| || | || ||| ||||||| || || || || || || || |||||||| |||||||||
--------------------------------------ctagacatttgtgacaa-gcatttatcttcacttttttttttgcatag------tttaattaatttttgttttgttgagat-------------tattgatatcgagctgcctattacagGTTAGTGTCCCTGAAGGAAAGAAGAGGGACAGGAGAAATGACTTGCTACTCATACGAGATGGAGGGGAATCATTCAGAATAATCGACAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|60340111|gb|DN207084.1|DN207084
EST:     TCTATGTTATTGACTCGAGAACAAGGTCAATCACAAGAGCTAAAGTTATG                         GTTAGTGTTCCTGAAGGAAAGAAAAGAGACCGGCGGAACGACCTGCTACTG
genomic: TCTATGTTATTGACTCGAGAACAAGGTCAATCACAAGAGCTAAAGTTATGgtaagtaaga ... tgtgtgacagGTTAGTGTTCCTGAAGGAAAGAAAAGAGACCGGCGGAACGACCTGCTACTG
EST: gi|166587949|gb|EG200244.1|EG200244
EST:     CTAAAGTTNTG                         GTTAGTGTTCCTGAAGGAAAGAAAAGNGACCGGCGGAACGACCTGCTACTG
genomic: CTAAAGTTATGgtaagtaaga ... tgtgtgacagGTTAGTGTTCCTGAAGGAAAGAAAAGAGACCGGCGGAACGACCTGCTACTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctccaccggtaaggatgagaacgtcgtcccactgatatccacccatgtgtgacagGTTAGTGTTCCTGAAGGAAAGAAAAGAGACCGGCGGAACGACCTGCTACTGATCCGTGACGGGGGTGAGTCTTTCAGAATCATCGACAAG
                             cactgat  putative branch site (score: 3)