1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtagtgattcctctgattctatctataaaaagaaactatcttatcttaatatgtgccattactgttgcttctactgcttgatttttcgaaatttgtagGGACATGGCGAGTGGGTGGTGTTCTTGCTGTCTCTCGCGCATTTGGTGATAAACTCTTGAAGCAGTATGTTGTCGCTGACCCTGAAATCAAG
species | Zea mays |
transcript | GRMZM5G829894_T01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AGATGAGAGACAAAGAATGGAGGACGCAGGGGGCTTTTTTATGTGGGTTG GGACATGGGGAGTGGGTGGTGTTCTTGCTGTCTCTCGCGCATTTGGTGAATEST: gi|166421171|gb|EG149350.1|EG149350
genomic: AGATGAGAGACAAAGAATTGAGGACGCAGGGGGCTTTGTTATGTGGGCTGgtagtgattc ... aaatttgtagGGACATGGCGAGTGGGTGGTGTTCTTGCTGTCTCTCGCGCATTTGGTG-AT
EST: AGATGAGAGACAAAGAATTGAGGACGCAGGGGGCTTTGTTATGTGGGCTG GGACATGGCGAGTGGGEST: gi|60359012|gb|DN225985.1|DN225985
genomic: AGATGAGAGACAAAGAATTGAGGACGCAGGGGGCTTTGTTATGTGGGCTGgtagtgattc ... aaatttgtagGGACATGGCGAGTGGG
EST: ACAAAGAATTGAGGACGCAGGGGGCTTTGTTATGTGGGCTG GGACATGGCGAGTGGGTGGTGTTCTTGCTGTCTCTCGCGCATTTGGTGATAEST: gi|31909593|gb|CD650996.1|CD650996
genomic: ACAAAGAATTGAGGACGCAGGGGGCTTTGTTATGTGGGCTGgtagtgattc ... aaatttgtagGGACATGGCGAGTGGGTGGTGTTCTTGCTGTCTCTCGCGCATTTGGTGATA
EST: AGATGAGAGACAAAGAATTGAGGACGCAGGGGGCTTTGTTATGTGGGCTG GGACATGGCGAGTGGGTGGTGTTCTTGCTGTCTCTCGCGCATTTGGTGATAEST: gi|60341056|gb|DN208029.1|DN208029
genomic: AGATGAGAGACAAAGAATTGAGGACGCAGGGGGCTTTGTTATGTGGGCTGgtagtgattc ... aaatttgtagGGACATGGCGAGTGGGTGGTGTTCTTGCTGTCTCTCGCGCATTTGGTGATA
EST: AGATGAGAGACAAAGAATTGAGGACGCAGGGGGCTTTGTTATGTGGGCTG GGACATGGCGAGTGGGTGGTGTTCTTGCTGTCTCTCGCGCATTTGGTGATAEST: gi|60358897|gb|DN225870.1|DN225870
genomic: AGATGAGAGACAAAGAATTGAGGACGCAGGGGGCTTTGTTATGTGGGCTGgtagtgattc ... aaatttgtagGGACATGGCGAGTGGGTGGTGTTCTTGCTGTCTCTCGCGCATTTGGTGATA
EST: ATGAGAGACAAAGAATTGAGGACGCAGGGGGCTTTGTTATGTGGGCTG GGACATGGCGAGTGGGTGGTGTTCTTGCTGTCTCTCGCGCATTTGGTGATAEST: gi|149099178|gb|EE185204.2|EE185204
genomic: ATGAGAGACAAAGAATTGAGGACGCAGGGGGCTTTGTTATGTGGGCTGgtagtgattc ... aaatttgtagGGACATGGCGAGTGGGTGGTGTTCTTGCTGTCTCTCGCGCATTTGGTGATA
EST: AGATGAGAGACAAAGAATTGAGGACGCAGGGGGCTTTGTTATGTGGGCTG GGACATGGCGAGTGGGTGGTGTTCTTGCTGTCTCTCGCGCATTTGGTGATAEST: gi|71326203|gb|DR799792.1|DR799792
genomic: AGATGAGAGACAAAGAATTGAGGACGCAGGGGGCTTTGTTATGTGGGCTGgtagtgattc ... aaatttgtagGGACATGGCGAGTGGGTGGTGTTCTTGCTGTCTCTCGCGCATTTGGTGATA
EST: AGATGAGAGACAAAGAATTGAGGACGCAGGGGGCTTTGTTATGTGGGCTG GGACATGGCGAGTGGGTGGTGTTCTTGCTGTCTCTCGCGCATTTGGTGATAEST: gi|60399036|gb|DN231852.1|DN231852
genomic: AGATGAGAGACAAAGAATTGAGGACGCAGGGGGCTTTGTTATGTGGGCTGgtagtgattc ... aaatttgtagGGACATGGCGAGTGGGTGGTGTTCTTGCTGTCTCTCGCGCATTTGGTGATA
EST: ATGAGAGACAAAGGAATTGAGGACGCAGGGGGGCTTTGTTATGTGGGCTG GGACATGGCGAGTGGGTGGTGTTCTTGCTGTCTCTCGCGCATTTGGTGATAEST: gi|21481348|gb|BQ578031.1|BQ578031
genomic: ATGAGAGACAAA-GAATTGAGGACGCA-GGGGGCTTTGTTATGTGGGCTGgtagtgattc ... aaatttgtagGGACATGGCGAGTGGGTGGTGTTCTTGCTGTCTCTCGCGCATTTGGTGATA
EST: AGATGAGAGACAAAGAATTGAGGACGCAGGGGGCTTTGTTATGTGGGCTG GGACATGGCGAGTGGGTGGTGTTCTTGCTGTCTCTCGCGCATTTGGTGATAEST: gi|33096324|gb|CF056318.1|CF056318
genomic: AGATGAGAGACAAAGAATTGAGGACGCAGGGGGCTTTGTTATGTGGGCTGgtagtgattc ... aaatttgtagGGACATGGCGAGTGGGTGGTGTTCTTGCTGTCTCTCGCGCATTTGGTGATA
EST: AGATGAGAGACAAAGAATTGAGGACGCAGGGGGCTTTGTTATGTGGGCTG GGACATGGCGAGTGGGTGGTGTTCTTGCTGTCTCTCGCGCATTTGGTGATA
genomic: AGATGAGAGACAAAGAATTGAGGACGCAGGGGGCTTTGTTATGTGGGCTGgtagtgattc ... aaatttgtagGGACATGGCGAGTGGGTGGTGTTCTTGCTGTCTCTCGCGCATTTGGTGATA
tcttaatatgtgccattactgttgcttctactgcttgatttttcgaaatttgtagGGACATGGCGAGTGGGTGGTGTTCTTGCTGTCTCTCGCGCATTTGGTGATAAACTCTTGAAGCAGTATGTTGTCGCTGACCCTGAAATCAAG
atttttcgaaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtagtgattcctctgattctatctataaaaagaaactatcttatcttaatatgtgccattactgttgcttctactgcttgatttttcgaaatttgtagGGACATGGCGAGTGGGTGGTGTTCTTGCTGTCTCTCGCGCATTTGGTGATAAACTCTTGAAGCAGTATGTTGTCGCTGACCCTGAAATCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC