1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...ttggtatttgacagaagtgctgaataatttgtatgaacccaatgtcacactggaggataagtaaatgaagtatttctgattgctatgttgttgaaaccagGGTGAGGTGCGTGCGTTCTTTGATGTCCACGAACAAGAAGGGAGCCACCCTGGAGGAGTGCATCTAGAGATGACTGGACAAAATGTTACAGAGTGCATCG
species | Zea mays |
transcript | GRMZM5G828182_T02 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CTATGAAGGCCCCTTGCGGACTCAAAACCCGCTCTTTCGATAGGATTTTG GGTGAGGTGCGTGCGTTCTTTGATGTCCACGAACAAGAAGGGAGCCACCCTEST: gi|211232751|gb|FL436022.1|FL436022
genomic: CTATGAAGGCCCCTTGCGGACTCAAAACCCGCTCGTTCGACAGGATTTTGgtaactctct ... ttgaaaccagGGTGAGGTGCGTGCGTTCTTTGATGTCCACGAACAAGAAGGGAGCCACCCT
EST: CTATGAAGGCCCCTTGCGGACTCAAAACCCGCTCGTTCGACAGGATTTTG GGTGAGGTGCGTGCGTTCTTTGATGTCCACGAACAAGAAGGGAGCCACCCTEST: gi|211368059|gb|FL471721.1|FL471721
genomic: CTATGAAGGCCCCTTGCGGACTCAAAACCCGCTCGTTCGACAGGATTTTGgtaactctct ... ttgaaaccagGGTGAGGTGCGTGCGTTCTTTGATGTCCACGAACAAGAAGGGAGCCACCCT
EST: CTATGAAGGCCCCTTGCGGACTCAAAACCCGCTCGTTCGATAGGATTTTG GGTGAGGTGCGTGCGTTCTTTGATGTCCACGAACAAGAAGGGAGCCACCCTEST: gi|211427348|gb|FL101761.1|FL101761
genomic: CTATGAAGGCCCCTTGCGGACTCAAAACCCGCTCGTTCGACAGGATTTTGgtaactctct ... ttgaaaccagGGTGAGGTGCGTGCGTTCTTTGATGTCCACGAACAAGAAGGGAGCCACCCT
EST: CTATGAAAGCCCCTTGCGGACTCAAAACCCGCTCGTTCGATAGGATTTTG GGTGAGGTGCGTGCGTTCTTTGATGTCCACGAACAAGA-GGAAGCAACCCTEST: gi|110941117|gb|EE161274.1|EE161274
genomic: CTATGAAGGCCCCTTGCGGACTCAAAACCCGCTCGTTCGACAGGATTTTGgtaactctct ... ttgaaaccagGGTGAGGTGCGTGCGTTCTTTGATGTCCACGAACAAGAAGGGAGCCACCCT
EST: CTATGAAGGCCCCTTGCGGACTCAAAACCCGCTCGTTCGACAGGATTTTG GGTGAGGTGCGTGCGTTCTTTGATGTCCACGAACAAGAAGGGAGCCACCCTEST: gi|78120449|gb|DV538833.1|DV538833
genomic: CTATGAAGGCCCCTTGCGGACTCAAAACCCGCTCGTTCGACAGGATTTTGgtaactctct ... ttgaaaccagGGTGAGGTGCGTGCGTTCTTTGATGTCCACGAACAAGAAGGGAGCCACCCT
EST: CTATGAAGGCCCCTTGCGGACTCAAAACCCGCTCGTTCGACAGGATTTTG GGTGAGGTGCGTGCGTTCTTTGATGTCCACGAACAAGAAGGGAGCCACCCTEST: gi|7162505|gb|AW520127.1|AW520127
genomic: CTATGAAGGCCCCTTGCGGACTCAAAACCCGCTCGTTCGACAGGATTTTGgtaactctct ... ttgaaaccagGGTGAGGTGCGTGCGTTCTTTGATGTCCACGAACAAGAAGGGAGCCACCCT
EST: CTATGAAGGCCCCTTGCGGACTCAAAACCCGCTCGTTCGACAGGATTTTG GGTGAGGTGCGTGCGTTCTTTGATGTCCACGAACAAGAAGGGAGCCACCCTEST: gi|91055056|gb|EB165474.1|EB165474
genomic: CTATGAAGGCCCCTTGCGGACTCAAAACCCGCTCGTTCGACAGGATTTTGgtaactctct ... ttgaaaccagGGTGAGGTGCGTGCGTTCTTTGATGTCCACGAACAAGAAGGGAGCCACCCT
EST: CTATGAAGGCCCCTTGCGGACTCAAAACCCGCTCGTTCGACAGGATTTTG GGTGAGGTGCGTGCGTTCTTTGATGTCCACGAACAAGAAGGGAGCCACCCTEST: gi|60396351|gb|DN229220.1|DN229220
genomic: CTATGAAGGCCCCTTGCGGACTCAAAACCCGCTCGTTCGACAGGATTTTGgtaactctct ... ttgaaaccagGGTGAGGTGCGTGCGTTCTTTGATGTCCACGAACAAGAAGGGAGCCACCCT
EST: CTATGAAGGCCCCTTGCGGACTCAAAACCCGCTCGTTCGATAGGATTTTG GGTGAGGTGCGTGCGTTCTTTGATGTCCACGAACAAGAAGGGAGCCACCCTEST: gi|78091973|gb|DV520347.1|DV520347
genomic: CTATGAAGGCCCCTTGCGGACTCAAAACCCGCTCGTTCGACAGGATTTTGgtaactctct ... ttgaaaccagGGTGAGGTGCGTGCGTTCTTTGATGTCCACGAACAAGAAGGGAGCCACCCT
EST: CTATGAAGGCCCCTTGCGGACTCAAAACCCGCTCGTTCGACAGGATTTTG GGTGAGGTGCGTGCGTTCTTTGATGTCCACGAACAAGAAGGGAGCCACCCTEST: gi|149082232|gb|EE171415.2|EE171415
genomic: CTATGAAGGCCCCTTGCGGACTCAAAACCCGCTCGTTCGACAGGATTTTGgtaactctct ... ttgaaaccagGGTGAGGTGCGTGCGTTCTTTGATGTCCACGAACAAGAAGGGAGCCACCCT
EST: CTATGAAGGCCCCTTGCGGACTCAAAACCCGCTCGTTCGACAGGATTTTG GGTGAGGTGCGTGCGTTCTTTGATGTCCACGAACAAGAAGGGAGCCACCCTEST: gi|211370702|gb|FL471722.1|FL471722
genomic: CTATGAAGGCCCCTTGCGGACTCAAAACCCGCTCGTTCGACAGGATTTTGgtaactctct ... ttgaaaccagGGTGAGGTGCGTGCGTTCTTTGATGTCCACGAACAAGAAGGGAGCCACCCT
EST: CTATGAAGGCCCCTTGCGGACTCAAAACCCGCTCGTTCGATAGGATTTTG GGTGAGGTGCGTGCGTTCTTTGATGTCCACGAACAAGAAGGGAGCCACCCT
genomic: CTATGAAGGCCCCTTGCGGACTCAAAACCCGCTCGTTCGACAGGATTTTGgtaactctct ... ttgaaaccagGGTGAGGTGCGTGCGTTCTTTGATGTCCACGAACAAGAAGGGAGCCACCCT
cacactggaggataagtaaatgaagtatttctgattgctatgttgttgaaaccagGGTGAGGTGCGTGCGTTCTTTGATGTCCACGAACAAGAAGGGAGCCACCCTGGAGGAGTGCATCTAGAGATGACTGGACAAAATGTTACAGAGTGCATCG
ttctgat putative branch site (score: 16)
taaatgaagtattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttggtatttgacagaagtgctgaataatttgtatgaacccaatgtcacactggaggataagtaaatgaagtatttctgattgctatgttgttgaaaccagGGTGAGGTGCGTGCGTTCTTTGATGTCCACGAACAAGAAGGGAGCCACCCTGGAGGAGTGCATCTAGAGATGACTGGACAAAATGTTACAGAGTGCATCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - -tgctgaa
- - - - - - - - - - - - - - ttgtatg
- - - - - - - - - - - - - - - - - -aacccaa
- - - - - - - - - - - - - - - - - - - - - - - -cactgga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaatgaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tatgttg