1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtatgtttcagattcttatgtgttactctgtatcgttttttctttacctattttttactatctgattgaatgtaactaacaccgtagtcatgtcatccttgtgtagGAATCAAGTGAGAAGTTAGCCATGGGTGAATTTTTTGGGATAAAACCTCCTGAGAAGAAG
species | Zea mays |
transcript | GRMZM5G825902_T01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TAAAAAGGATTCGGCTAACCATCATCAACAACCTTCTCCAGTACCATCCT GAATCAAGTGAGAAGTTAGCCATGGGTGAATTTTTTGTGGATAAAACCTCCEST: gi|60394317|gb|DN227187.1|DN227187
genomic: TAGAAAGGATTCGGCTAACCATCATCAACAACCTTCTCCAGTACCATCCTgtatgtttca ... ccttgtgtagGAATCAAGTGAGAAGTTAGCCATGGGTGAATTTTTTG-GGATAAAACCTCC
EST: TAGAAAGGATTCGGCTAACCATCATCAACAACCTTCTCCAGTACCATCCT GAATCAAGTGAGAAGTTAGCCATGGGTGAATTTTTTGGGATAAAACCTCCTEST: gi|31356321|gb|CD440678.1|CD440678
genomic: TAGAAAGGATTCGGCTAACCATCATCAACAACCTTCTCCAGTACCATCCTgtatgtttca ... ccttgtgtagGAATCAAGTGAGAAGTTAGCCATGGGTGAATTTTTTGGGATAAAACCTCCT
EST: TAACCATCATCAACAACCTTCTCCAGTACCATCCT GAATCAAGTGAGAAGTTAGCCATGGGTGAATTTTTTGGGATAAAACCTCCTEST: gi|31353042|gb|CD437399.1|CD437399
genomic: TAACCATCATCAACAACCTTCTCCAGTACCATCCTgtatgtttca ... ccttgtgtagGAATCAAGTGAGAAGTTAGCCATGGGTGAATTTTTTGGGATAAAACCTCCT
EST: TAGAAAGGATTCGGCTAACCATCATCAACAACCTTCTCCAGTACCATCCT GAATCAAGTGAGAAGTTAGCCATGGGTGAATTTTTTGGGATAAAACCTCCTEST: gi|6194493|gb|AW146597.1|AW146597
genomic: TAGAAAGGATTCGGCTAACCATCATCAACAACCTTCTCCAGTACCATCCTgtatgtttca ... ccttgtgtagGAATCAAGTGAGAAGTTAGCCATGGGTGAATTTTTTGGGATAAAACCTCCT
EST: TAGAAAGGATTCGGCTAACCATCATCAACAACCTTCTCCAGTACCATCCT GAATCAAGTGAGAAGTTAGCCATGGGTGAATTTTTTGGGATAAAACCTCCTEST: gi|31360452|gb|CD444809.1|CD444809
genomic: TAGAAAGGATTCGGCTAACCATCATCAACAACCTTCTCCAGTACCATCCTgtatgtttca ... ccttgtgtagGAATCAAGTGAGAAGTTAGCCATGGGTGAATTTTTTGGGATAAAACCTCCT
EST: TAGAAAGGATTCGGCTAACCATCATCAACAACCTTCTCCAGTACCATCCT GAATCAAGTGAGAAGTTAGCCATGGGTGAATTTTTTGGGATAAAACCTCCT
genomic: TAGAAAGGATTCGGCTAACCATCATCAACAACCTTCTCCAGTACCATCCTgtatgtttca ... ccttgtgtagGAATCAAGTGAGAAGTTAGCCATGGGTGAATTTTTTGGGATAAAACCTCCT
tttttactatctgattgaatgtaactaacaccgtagtcatgtcatccttgtgtagGAATCAAGTGAGAAGTTAGCCATGGGTGAATTTTTTGGGATAAAACCTCCTGAGAAGAAG
aactaac putative branch site (score: 1)
tcatcctt putative PPT
attgaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgtttcagattcttatgtgttactctgtatcgttttttctttacctattttttactatctgattgaatgtaactaacaccgtagtcatgtcatccttgtgtagGAATCAAGTGAGAAGTTAGCCATGGGTGAATTTTTTGGGATAAAACCTCCTGAGAAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG