1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...ggatgtgttgacaatcatgctttaataacaaataacctgctcatgaatttctggttcgtatttagccaaaaaaatagtatttatggctctttcgttccagGTTTTGTATGGTTTATTTTGACTCTCAAGAAAAAGACATATAAGTACCAGTTCAAACAGTATGCCTGGACGCACATGATACTTCTAACGGTTTTTGCACA
species | Zea mays |
transcript | GRMZM5G825110_T02 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TGGCCTAATAAAGTATCAGATGTTTATCTGTTATTTTCTTTATATTGCAG GTTTTGTATGGTTTATTTTGACTCTCAAGAAAA-GACATATAAGTACCAGTEST: gi|71426534|gb|DR807584.1|DR807584
genomic: TGGCCTAATAAAGTATCAGATGTTTATCTGTTATTTTCTTTATATTGCAGgtaggctcag ... ttcgttccagGTTTTGTATGGTTTATTTTGACTCTCAAGAAAAAGACATATAAGTACCAGT
EST: TGGCCTAATAAAGTATCAGATGTTTATCTGTTATTTTCTTTATATTGCAG GTTTTGTATGGTTTATTTTGACTCTCAAGAAAAAGACATATAAGTACCAGTEST: gi|76287486|gb|DV027054.1|DV027054
genomic: TGGCCTAATAAAGTATCAGATGTTTATCTGTTATTTTCTTTATATTGCAGgtaggctcag ... ttcgttccagGTTTTGTATGGTTTATTTTGACTCTCAAGAAAAAGACATATAAGTACCAGT
EST: TGGCCTAATAAAGTATCAGATGTTTATCTGTTATTTTCTTTATATTGCAG GTTTTGTATGGTTTATTTTGACTCTCAAGAAAAAGACATATAAGTACCAGTEST: gi|149000638|gb|EE037841.2|EE037841
genomic: TGGCCTAATAAAGTATCAGATGTTTATCTGTTATTTTCTTTATATTGCAGgtaggctcag ... ttcgttccagGTTTTGTATGGTTTATTTTGACTCTCAAGAAAAAGACATATAAGTACCAGT
EST: TGGCCTAATAAAGTATCAGATGTTTATCTGTTATTTTCTTTATATTGCAG GTTTTGTATGGTTTATTTTGACTCTCAAGAAAAAGACATACAAGTACCAGTEST: gi|71426083|gb|DR807133.1|DR807133
genomic: TGGCCTAATAAAGTATCAGATGTTTATCTGTTATTTTCTTTATATTGCAGgtaggctcag ... ttcgttccagGTTTTGTATGGTTTATTTTGACTCTCAAGAAAAAGACATATAAGTACCAGT
EST: TGGCCTAATAAAGTATCAGATGTTTATCTGTTATTTTCTTTATATTGCAG GTTTTGTATGGTTTATTTTGACTCTCAAGAAAAAGACATATAAGTACCAGTEST: gi|93283949|gb|EB676213.1|EB676213
genomic: TGGCCTAATAAAGTATCAGATGTTTATCTGTTATTTTCTTTATATTGCAGgtaggctcag ... ttcgttccagGTTTTGTATGGTTTATTTTGACTCTCAAGAAAAAGACATATAAGTACCAGT
EST: TGGCCTAATAAAGTATCAGATGTTTATCTGTTATTTTCTTTATATTGCAG GTTTTGTATGGTTTATTTTGACTCTCAAGAAAAAGACATATAAGTACCAGTEST: gi|76014867|gb|DT942037.1|DT942037
genomic: TGGCCTAATAAAGTATCAGATGTTTATCTGTTATTTTCTTTATATTGCAGgtaggctcag ... ttcgttccagGTTTTGTATGGTTTATTTTGACTCTCAAGAAAAAGACATATAAGTACCAGT
EST: TGGCCTAATAAAGTATCAGATGTTTATCTGTTATTTTCTTTATATTGCAG GTTTTGTATGGTTTATTTTGACTCTCAAGAAAAAGACATATAAGTACCAGTEST: gi|78121241|gb|DV539625.1|DV539625
genomic: TGGCCTAATAAAGTATCAGATGTTTATCTGTTATTTTCTTTATATTGCAGgtaggctcag ... ttcgttccagGTTTTGTATGGTTTATTTTGACTCTCAAGAAAAAGACATATAAGTACCAGT
EST: TGGCCTAATAAAGTATCAGATGTTTATCTGTTATTTTCTTTATATTGCAG GTTTTGTATGGTTTATTTTGACTCTCAAGAAAAAGACAT
genomic: TGGCCTAATAAAGTATCAGATGTTTATCTGTTATTTTCTTTATATTGCAGgtaggctcag ... ttcgttccagGTTTTGTATGGTTTATTTTGACTCTCAAGAAAAAGACAT
aatttctggttcgtatttagccaaaaaaatagtatttatggctctttcgttccagGTTTTGTATGGTTTATTTTGACTCTCAAGAAAAAGACATATAAGTACCAGTTCAAACAGTATGCCTGGACGCACATGATACTTCTAACGGTTTTTGCACA
ctctttcgttcc CT-rich tract
aaaaaaatagtattta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggatgtgttgacaatcatgctttaataacaaataacctgctcatgaatttctggttcgtatttagccaaaaaaatagtatttatggctctttcgttccagGTTTTGTATGGTTTATTTTGACTCTCAAGAAAAAGACATATAAGTACCAGTTCAAACAGTATGCCTGGACGCACATGATACTTCTAACGGTTTTTGCACA
- -tgtgttg
- - - - - - - -catgctt
- - - - - - - - - - - - -taacaaa
- - - - - - - - - - - - - - - - - -cctgctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaaaaa