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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttactttgaccaccggaactcctctgtgtcacgtttcttgtcctgctgtttccctttccctgaactgaactggagccgtcgtcccgatctctgcagGAGGTAGGACTGCCAAGCCATGTCGCCACATTCTCGTCAAAG

Basic information

species Zea mays
transcript GRMZM5G822098_T01
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211326786|gb|FL341537.1|FL341537
EST:     CTGCCAGGGTGCTGGTGAACAGCGTCGAAGCCTGCCGGCACS-C-GCAAG                         GAGGTAGGACTGCCAAGCCATGTCGCCACATTCTCGTCAAAG
genomic: CTGCCAGGGTGCTGGTGAACAGCGTCGAAGCCTGCCGGCACGGCCGCAAGgttactttga ... atctctgcagGAGGTAGGACTGCCAAGCCATGTCGCCACATTCTCGTCAAAG
EST: gi|148990367|gb|EE031933.2|EE031933
EST:     CTGCCAGGGTGCTGGTGAACAGCGTCGAAGCCTGCCGGCACGGCCGCAAG                         GAGGTAGGACTGCCAAGCCATGTCGCCACATTCTCGTCAAAG
genomic: CTGCCAGGGTGCTGGTGAACAGCGTCGAAGCCTGCCGGCACGGCCGCAAGgttactttga ... atctctgcagGAGGTAGGACTGCCAAGCCATGTCGCCACATTCTCGTCAAAG
EST: gi|94472889|gb|EB701847.1|EB701847
EST:     CTGCCAGGGTGCTGGTGAACAGCGTCGAAGCCTGCCGGCACGGCCGCAAG                         GAGGTAGGACTGCCAAGCCATGTCGCCACATTCTCGTCAAAG
genomic: CTGCCAGGGTGCTGGTGAACAGCGTCGAAGCCTGCCGGCACGGCCGCAAGgttactttga ... atctctgcagGAGGTAGGACTGCCAAGCCATGTCGCCACATTCTCGTCAAAG
EST: gi|211409814|gb|FL346481.1|FL346481
EST:     CTGCCAGGGTGCTGGTGAACAGCGTCGAAGCCTGCCGGCACGGCCGCMAG                         GAGGTAGGACTGCCAAGCCATGTCGCCACATTCTCGTCA
genomic: CTGCCAGGGTGCTGGTGAACAGCGTCGAAGCCTGCCGGCACGGCCGCAAGgttactttga ... atctctgcagGAGGTAGGACTGCCAAGCCATGTCGCCACATTCTCGTCA
EST: gi|78116852|gb|DV535239.1|DV535239
EST:     CTGCCAGGGTGCTGGTGAACAGCGTCGAAGCCTGCCGGCACGGCCGCAAG                         GAGGTAGGACTGCCAAGCCATGTCGCCACATTCTCGTCAAAG
genomic: CTGCCAGGGTGCTGGTGAACAGCGTCGAAGCCTGCCGGCACGGCCGCAAGgttactttga ... atctctgcagGAGGTAGGACTGCCAAGCCATGTCGCCACATTCTCGTCAAAG
EST: gi|101391075|gb|EB817471.1|EB817471
EST:     CTGCCAGGGTGCTGGTGAACAGCGTCGAAGCCTGCCGGCACGGCCGCAAG                         GAGGTAGGACTGCCAAGCCATGTCGCCACATTCTCGTCAAAG
genomic: CTGCCAGGGTGCTGGTGAACAGCGTCGAAGCCTGCCGGCACGGCCGCAAGgttactttga ... atctctgcagGAGGTAGGACTGCCAAGCCATGTCGCCACATTCTCGTCAAAG
EST: gi|76292228|gb|DV031796.1|DV031796
EST:     TGCCAGGGTGCTGGTGAACAGCGTCGAAGCCTGCCGGCACGGCCGNCA-G                         GAGGTAGGACTGCCAAGCCATGTCGCCACATTCTCGTCAAAG
genomic: TGCCAGGGTGCTGGTGAACAGCGTCGAAGCCTGCCGGCACGGCCG-CAAGgttactttga ... atctctgcagGAGGTAGGACTGCCAAGCCATGTCGCCACATTCTCGTCAAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cctgctgtttccctttccctgaactgaactggagccgtcgtcccgatctctgcagGAGGTAGGACTGCCAAGCCATGTCGCCACATTCTCGTCAAAG
                                              tctctgc  CT-rich tract