1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gttagcaattgctggcaattttctctctttccagtttgatacattccttttgttcttttgtttatatatgctttttcttaccctggatagaattgtaaactattacactactgttatttacagGGAACTGTTAATAATGAGACACTTGGTTACTTCATTGGAAGGGTCTATCTTTTCCTGACAAGCTTGGGAATTGATAAGGGCCGGTTGCGCTTCAGGCAGC
species | Zea mays |
transcript | GRMZM5G821551_T03 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TCTCTGGGGAGTCAGCCAAGCTAATGAAGCTTGGGGAAGCAGTTTCAAAG GGAACTGTTAATAATGAGACTCTTGGTTACTTCATTGGAAGGGTCTATCTTEST: gi|31349934|gb|CD434291.1|CD434291
genomic: TCTCTGGGGAGTCAGCCAAGCTAATGAAGCTTGGGGAAGCAGTTTCAAAGgttagcaatt ... ttatttacagGGAACTGTTAATAATGAGACACTTGGTTACTTCATTGGAAGGGTCTATCTT
EST: TCTCTGGGGAGTCAGCCAAGCTACTGAAGCTTGGGGAAGCAGTTTCAAAG GGAACTGTTAATAATGATATTTTTGGTTACTTCATTGGAAGGGTCTATCTTEST: gi|32840640|gb|CD980321.1|CD980321
genomic: TCTCTGGGGAGTCAGCCAAGCTAATGAAGCTTGGGGAAGCAGTTTCAAAGgttagcaatt ... ttatttacagGGAACTGTTAATAATGAGACACTTGGTTACTTCATTGGAAGGGTCTATCTT
EST: TCTCTGGGGAGTCAGCCAAGCTAATGAAGCTTGGGGAAGCAGGTTCAAAG GGAACTGTTAATAATGAGACACTTGGTTACTTCATTGGAAGGGTCTATCTTEST: gi|31351285|gb|CD435642.1|CD435642
genomic: TCTCTGGGGAGTCAGCCAAGCTAATGAAGCTTGGGGAAGCAGTTTCAAAGgttagcaatt ... ttatttacagGGAACTGTTAATAATGAGACACTTGGTTACTTCATTGGAAGGGTCTATCTT
EST: TCTCTGGGGAGTCAGCCAAGCTAATGAAGCTTGGGGAAGCAGTTTCAAAG GGAACTGTTAATAATGAGACACTTGGTTACTTCATTGGAAGGGTCTATCTTEST: gi|31349068|gb|CD433425.1|CD433425
genomic: TCTCTGGGGAGTCAGCCAAGCTAATGAAGCTTGGGGAAGCAGTTTCAAAGgttagcaatt ... ttatttacagGGAACTGTTAATAATGAGACACTTGGTTACTTCATTGGAAGGGTCTATCTT
EST: TCTCTGGGGAGTCAGCCAAGCTAATGAAGCTTGGGGAAGCAGTTTCAAAG GGAACTGTTAATAATGATTTTCTTGGTTACTTCATTGGAAGGGTCTATCTT
genomic: TCTCTGGGGAGTCAGCCAAGCTAATGAAGCTTGGGGAAGCAGTTTCAAAGgttagcaatt ... ttatttacagGGAACTGTTAATAATGAGACACTTGGTTACTTCATTGGAAGGGTCTATCTT
tgctttttcttaccctggatagaattgtaaactattacactactgttatttacagGGAACTGTTAATAATGAGACACTTGGTTACTTCATTGGAAGGGTCTATCTTTTCCTGACAAGCTTGGGAATTGATAAGGGCCGGTTGCGCTTCAGGCAGC
ttcttac putative branch site (score: 2)
aattgtaaactatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttagcaattgctggcaattttctctctttccagtttgatacattccttttgttcttttgtttatatatgctttttcttaccctggatagaattgtaaactattacactactgttatttacagGGAACTGTTAATAATGAGACACTTGGTTACTTCATTGGAAGGGTCTATCTTTTCCTGACAAGCTTGGGAATTGATAAGGGCCGGTTGCGCTTCAGGCAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT