1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtatgatgcttcctgcaatcccattctctctctctctctctccatttgttatacatgtaagaatctaacaaagccatatattctttaccatcagCTTCTCCGCTTCCCTGGCGTTCCTTCGTCTTCCCTTGGATTCTCCCCGGAAATGATGCACCCACAGCTGCAGCTCTCGCAGCCAGGCCTGATCCAGGGCG
species | Zea mays |
transcript | GRMZM5G818643_T02 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CGGTAAACCCAAGGCTCGACCTCAACATAGAAGGGCTTCTATCGAAAGAT CTTCTCCGCTTCCCTGGCGTTCCTTCGTCTTCCCTTGGATTCTCCCCGGAAEST: gi|28361629|gb|CB239985.1|CB239985
genomic: CGGTAAACCCAAGGCTCGACCTCAACATAGAAGGGCTTCTATCGAAAGATgtatgatgct ... ttaccatcagCTTCTCCGCTTCCCTGGCGTTCCTTCGTCTTCCCTTGGATTCTCCCCGGAA
EST: TAAACCCAAGGCTCGACCTCAACACTAGAAGGGCTTCTATCGAAAGAT CTTCTCCGCTTCCCTGGCGTTCCTTCGTCTTCCCTTGGATTCTCCCCGGAA
genomic: TAAACCCAAGGCTCGACCTCAACA-TAGAAGGGCTTCTATCGAAAGATgtatgatgct ... ttaccatcagCTTCTCCGCTTCCCTGGCGTTCCTTCGTCTTCCCTTGGATTCTCCCCGGAA
ctccatttgttatacatgtaagaatctaacaaagccatatattctttaccatcagCTTCTCCGCTTCCCTGGCGTTCCTTCGTCTTCCCTTGGATTCTCCCCGGAAATGATGCACCCACAGCTGCAGCTCTCGCAGCCAGGCCTGATCCAGGGCG
atctaac putative branch site (score: 2)
ttctttacc putative PPT
atatattcttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgatgcttcctgcaatcccattctctctctctctctctccatttgttatacatgtaagaatctaacaaagccatatattctttaccatcagCTTCTCCGCTTCCCTGGCGTTCCTTCGTCTTCCCTTGGATTCTCCCCGGAAATGATGCACCCACAGCTGCAGCTCTCGCAGCCAGGCCTGATCCAGGGCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC