1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtaagccaataacaaaagaacactttgagaaatataatacatgtgccccattgtgtttcttaacaacttttgtgctgtgttacccagGTACCAAGAGTATAGAACTGAGTATATCACTACTCAGAAACGTGCTTATTTTGATCTCCACAAGAATGAAGATTG
species | Zea mays |
transcript | GRMZM5G817439_T01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TTCATGCAAGTTCTTGAGGATGATATTTCACCAAGTGAAGCTGAACGCAG GTACCAAGAGTATAGAACTGAGTATATCACTACTCAGAAACGTGCTTATTTEST: gi|211002489|gb|FL362411.1|FL362411
genomic: TTCATGCAAGTTCTTGAGGATGATATTTCACCAAGTGAAGCTGAACGCAGgtaagccaat ... tgttacccagGTACCAAGAGTATAGAACTGAGTATATCACTACTCAGAAACGTGCTTATTT
EST: AAGTGAAGCTGAACGCAG GTACCAAGAGTATAGAACTGAGTATATCACTACTCAGAAACGTGCTTATTT
genomic: AAGTGAAGCTGAACGCAGgtaagccaat ... tgttacccagGTACCAAGAGTATAGAACTGAGTATATCACTACTCAGAAACGTGCTTATTT
tataatacatgtgccccattgtgtttcttaacaacttttgtgctgtgttacccagGTACCAAGAGTATAGAACTGAGTATATCACTACTCAGAAACGTGCTTATTTTGATCTCCACAAGAATGAAGATTG
tcttaac putative branch site (score: 29)
tttcttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagccaataacaaaagaacactttgagaaatataatacatgtgccccattgtgtttcttaacaacttttgtgctgtgttacccagGTACCAAGAGTATAGAACTGAGTATATCACTACTCAGAAACGTGCTTATTTTGATCTCCACAAGAATGAAGATTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA