1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...acaaacaaatatttttatatgctttctaagctcaacatctgcaatacctatctgagctcttaattgtactcattttgtttaatgttctctttgtgttcagTATGGCAGAAACTTGAAGAAGAAAACTCCGAGTTCTTTAGGGCTTACTATATACGGTTGAAGTTGAAAAGGCAGATCATCTTGTTCAATCATTTATTGCA
species | Zea mays |
transcript | GRMZM5G816784_T03 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AGAACTCTTTCTACTCGTGCTAGAATAGAACCTGGCTTTCACTACTTTAG TATGGCAGAAACTTGAAGAAGAAAACTCCGAGTTCTTTAGGGCTTACTATAEST: gi|211440032|gb|FK972557.1|FK972557
genomic: AGAACTCTTTCTACTCGTGCTAGAATAGAACCTGGCTT-CACTACTTTAGgtaatgtgct ... ttgtgttcagTATGGCAGAAACTTGAAGAAGAAAACTCCGAGTTCTTTAGGGCTTACTATA
EST: TAGAACTCTTTCTACTCGTGCTAGAATAGAACCTGGCTTCACTACTTTAG TATGGCAGAAACTTGAAGAAGAAAACTCTGAGTTCTTTAGGGCTTACTATAEST: gi|74236845|gb|DT644759.1|DT644759
genomic: TAGAACTCTTTCTACTCGTGCTAGAATAGAACCTGGCTTCACTACTTTAGgtaatgtgct ... ttgtgttcagTATGGCAGAAACTTGAAGAAGAAAACTCCGAGTTCTTTAGGGCTTACTATA
EST: TAGAACTCTTTCTACTCGTGCTAGAATAGAACCTGGCTTCACTACTTTAG TATGGCAGAAACTTGAAGAAGAAAACTCCGAGTTCTTTAGGGCTTACTATAEST: gi|211440029|gb|FK972554.1|FK972554
genomic: TAGAACTCTTTCTACTCGTGCTAGAATAGAACCTGGCTTCACTACTTTAGgtaatgtgct ... ttgtgttcagTATGGCAGAAACTTGAAGAAGAAAACTCCGAGTTCTTTAGGGCTTACTATA
EST: TAGAACTCTTTCTACTCGTGCTAGAATAGAACCTGGCTTCACTACTTTAG TATGGCAGAAAACTTGAAGAAGAAAACTCTTGAGTTCTTTAGGGGCTTACT
genomic: TAGAACTCTTTCTACTCGTGCTAGAATAGAACCTGGCTTCACTACTTTAGgtaatgtgct ... ttgtgttcagTATGGCAGAAA-CTTGAAGAAGAAAACTCC-GAGTTCTTTAGGG-CTTACT
acctatctgagctcttaattgtactcattttgtttaatgttctctttgtgttcagTATGGCAGAAACTTGAAGAAGAAAACTCCGAGTTCTTTAGGGCTTACTATATACGGTTGAAGTTGAAAAGGCAGATCATCTTGTTCAATCATTTATTGCA
ttctctttgtgttc CT-rich tract
attttgtttaatgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acaaacaaatatttttatatgctttctaagctcaacatctgcaatacctatctgagctcttaattgtactcattttgtttaatgttctctttgtgttcagTATGGCAGAAACTTGAAGAAGAAAACTCCGAGTTCTTTAGGGCTTACTATATACGGTTGAAGTTGAAAAGGCAGATCATCTTGTTCAATCATTTATTGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA