1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...acaaacaaatatttttatatgctttctaagctcaacatctgcaatacctatctgagctcttaattgtactcattttgtttaatgttctctttgtgttcagTATGGCAGAAACTTGAAGAAGAAAACTCCGAGTTCTTTAGGGCTTACTATATACGGTTGAAGTTGAAAAGGCAGATCATCTTGTTCAATCATTTATTGCA
species | Zea mays |
transcript | GRMZM5G816784_T02 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TAGAACTCTTTCTACTCGTGCTAGAATAGAACCTGGCTTCACTACTTTAG TATGGCAGAAACTTGAAGAAGAAAACTCCGAGTTCTTTAGGGCTTACTATAEST: gi|211091595|gb|FL347140.1|FL347140
genomic: TAGAACTCTTTCTACTCGTGCTAGAATAGAACCTGGCTTCACTACTTTAGgtaatgtgct ... ttgtgttcagTATGGCAGAAACTTGAAGAAGAAAACTCCGAGTTCTTTAGGGCTTACTATA
EST: TAGAACTCTTTCTACTCGTGCTAGAATAGAACCTGGCTTCACTACTTTAG TATGGCAGAAACTTGAAGAAGAAAACTCCGAGTTCTTTAGGGCTTACTATA
genomic: TAGAACTCTTTCTACTCGTGCTAGAATAGAACCTGGCTTCACTACTTTAGgtaatgtgct ... ttgtgttcagTATGGCAGAAACTTGAAGAAGAAAACTCCGAGTTCTTTAGGGCTTACTATA
acctatctgagctcttaattgtactcattttgtttaatgttctctttgtgttcagTATGGCAGAAACTTGAAGAAGAAAACTCCGAGTTCTTTAGGGCTTACTATATACGGTTGAAGTTGAAAAGGCAGATCATCTTGTTCAATCATTTATTGCA
ttctctttgtgttc CT-rich tract
attttgtttaatgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acaaacaaatatttttatatgctttctaagctcaacatctgcaatacctatctgagctcttaattgtactcattttgtttaatgttctctttgtgttcagTATGGCAGAAACTTGAAGAAGAAAACTCCGAGTTCTTTAGGGCTTACTATATACGGTTGAAGTTGAAAAGGCAGATCATCTTGTTCAATCATTTATTGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA