Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtaaatatcaatttcaaatgtttagcattctattctctccagattagtgctcaatttgacaatctacccaccttgctctttcagCGATGTTTCAAGCAATGATTTATGTGGGACGATTCCCACATCTGGACCATTTGAGCACATTCCTCTGAGCAA

Basic information

species Zea mays
transcript GRMZM5G815009_T02
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G815009_T02 (Zea mays), 3'ss of exon 4
lower sequence: LOC_Os01g59440.3 (Oryza sativa), 3'ss of exon 3
gtaagtaaatatcaatttcaaatgtttagcattctattctctccagattagtgctcaatttgacaa-tctacccaccttgctctttcagCGATGTTTCAAGCAATGATTTATGTGGGACGATTCCCACATCTGGACCATTTGAGCACATTCCTCTGAGCAA
    |||| || ||||| |   || | ||   |       || || |  | |  | ||| ||| || | |  || ||||| |||||||| |||||||||||||||||| | ||||| || ||||| ||||| |||||||||||||||||||| || |||||
----gtaagta-caattcctggtgctgagtgcttgg----ctgcaaac-aatcttgaatgtgataaattttacccccttgttctttcagTGATGTTTCAAGCAATGATCTGTGTGGAACAATTCCTACATCAGGACCATTTGAGCACATTCCCCTAAGCAA

upper sequence: GRMZM5G815009_T02 (Zea mays), 3'ss of exon 4
lower sequence: LOC_Os01g59440.2 (Oryza sativa), 3'ss of exon 4
gtaagtaaatatcaatttcaaatgtttagcattctattctctccagattagtgctcaatttgacaa-tctacccaccttgctctttcagCGATGTTTCAAGCAATGATTTATGTGGGACGATTCCCACATCTGGACCATTTGAGCACATTCCTCTGAGCAA----------------------------
    |||| || ||||| |   || | ||   |       || || |  | |  | ||| ||| || | |  || ||||| |||||||| |||||||||||||||||| | ||||| || ||||| ||||| |||||||||||||||||||| || |||||                            
----gtaagta-caattcctggtgctgagtgcttgg----ctgcaaac-aatcttgaatgtgataaattttacccccttgttctttcagTGATGTTTCAAGCAATGATCTGTGTGGAACAATTCCTACATCAGGACCATTTGAGCACATTCCCCTAAGCAAGTAAGTTTGACTGCCTTTGTGATACTAT

upper sequence: GRMZM5G815009_T02 (Zea mays), 3'ss of exon 4
lower sequence: GLYMA02G44250.2 (Glycine max), 3'ss of exon 4
-----gtaagtaa--atatcaatttcaaatgtttagcattctattctctcc--------------agattagtgct--caatttgacaatctacccaccttgctctttcagCGATGTTTCAAGCAATGATTTATGTGGGACGATTCCCACATCTGGACCATTTGAGCACATTCCTCTGAGCAA
     ||||||||  || |    || | ||||| | |||  ||   ||                 ||||  |||||  |||   | | |   |  ||| ||    |||||| ||||| || | ||||||||||||||| || ||||| |||||||| ||||| ||||| |||||  |||  ||
gtagtgtaagtaacaatcttgtgtttatatgttgatcatgataaaatcatttggtggtatcgtgaagatgtgtgctttcaaagagcctaaacattcactttat--tttcagGGATGTCTCCAACAATGATTTATGTGGTACAATTCCTACATCTGGGCCATTCGAGCATATTCCATTGAATAA

upper sequence: GRMZM5G815009_T02 (Zea mays), 3'ss of exon 4
lower sequence: GLYMA02G44250.1 (Glycine max), 3'ss of exon 4
gtaagtaa--atatcaatttcaaatgtttagcattctattctctcc--------------agattagtgct--caatttgacaatctacccaccttgctctttcagCGATGTTTCAAGCAATGATTTATGTGGGACGATTCCCACATCTGGACCATTTGAGCACATTCCTCTGAGCAA
||||||||  || |    || | ||||| | |||  ||   ||                 ||||  |||||  |||   | | |   |  ||| ||    |||||| ||||| || | ||||||||||||||| || ||||| |||||||| ||||| ||||| |||||  |||  ||
gtaagtaacaatcttgtgtttatatgttgatcatgataaaatcatttggtggtatcgtgaagatgtgtgctttcaaagagcctaaacattcactttat--tttcagGGATGTCTCCAACAATGATTTATGTGGTACAATTCCTACATCTGGGCCATTCGAGCATATTCCATTGAATAA

upper sequence: GRMZM5G815009_T02 (Zea mays), 3'ss of exon 4
lower sequence: Vv06s0009g01210.t01 (Vitis vinifera), 3'ss of exon 4
------------gtaagtaaatatcaatttcaaatgt-ttagca-ttctattctctccagattagtgctcaatttgacaatctacccaccttgctctttcagCGATGTTTCAAGCAATGATTTATGTGGGACGATTCCCACATCTGGACCATTTGAGCACATTCCTCTGAGCAA
            ||   || |  | | |||  | ||  | ||   ||||||  |||    | | ||  |  | || | ||| ||   |  |||    ||||| ||||||||||||||  | |||||||| || ||||| ||| | ||||| ||||||||||||||  ||| |||
gtaagtggttttgttcttatac-ttattttttagtgcatcagtgcttctatgatctgtttagttgtagtgcactt-ataatgtaaaaaatttgtgtattcagTGATGTTTCAAGCAACAACTTATGTGGAACAATTCCAACAACCGGACCGTTTGAGCACATTCCATTGAACAA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|93283939|gb|EB676203.1|EB676203
EST:     ACTGGGCCGATCCCAAGGGAACTTTCTGGAATATCTAGTCTCAAAGTTGT                         CGATGTTTCAAGCAATGATTTATGTGGGACGATTCCCACATCTGGACCATT
genomic: ACTGGGCCGATCCCAAGGGAACTTTCTGGAATATCTAGTCTCAAAGTTGTgtaagtaaat ... gctctttcagCGATGTTTCAAGCAATGATTTATGTGGGACGATTCCCACATCTGGACCATT
EST: gi|78117751|gb|DV536138.1|DV536138
EST:     ACTGGGCCGATCCCAAGGGAACTTTCTGGAATATCTAGTCTCAAAGTTGT                         CGATGTTTCAAGCAATGATTTATGTGGGACGATTCCCACATCTGGACCATT
genomic: ACTGGGCCGATCCCAAGGGAACTTTCTGGAATATCTAGTCTCAAAGTTGTgtaagtaaat ... gctctttcagCGATGTTTCAAGCAATGATTTATGTGGGACGATTCCCACATCTGGACCATT
EST: gi|89754453|gb|DY685228.1|DY685228
EST:     ACTGGGCCGATCCCAAGGGAACTTTCTGGAATATCTAGTCTCAAAGTTGT                         CGATGTTTCAAGCAATGATTTATGTGGGACGATTCCCACATCTGGACCATT
genomic: ACTGGGCCGATCCCAAGGGAACTTTCTGGAATATCTAGTCTCAAAGTTGTgtaagtaaat ... gctctttcagCGATGTTTCAAGCAATGATTTATGTGGGACGATTCCCACATCTGGACCATT
EST: gi|120481015|gb|EH211119.1|EH211119
EST:     ACTGGGCCGATCCCAAGGGAACTTTCTGGAATATCTAGTCTCAAAGTTGT                         CGATGTTTCAAGCAATGATTTATGTGGGACGATTCCCACATCTGGACCATT
genomic: ACTGGGCCGATCCCAAGGGAACTTTCTGGAATATCTAGTCTCAAAGTTGTgtaagtaaat ... gctctttcagCGATGTTTCAAGCAATGATTTATGTGGGACGATTCCCACATCTGGACCATT
EST: gi|74240378|gb|DT648292.1|DT648292
EST:     ACTGGGCCGATCCCAAGGGAACTTTCTGGAATATCTAGTCTCAAAGTTGT                         CGATGTTTCAAGCAATGATTTATGTGGGACGATTCCCACATCTGGACCATT
genomic: ACTGGGCCGATCCCAAGGGAACTTTCTGGAATATCTAGTCTCAAAGTTGTgtaagtaaat ... gctctttcagCGATGTTTCAAGCAATGATTTATGTGGGACGATTCCCACATCTGGACCATT
EST: gi|149101777|gb|EE187896.2|EE187896
EST:     ACTGGGCCGATCCCAAGGGAACTTTCTGGAATATCTAGTCTCAAAGTTGT                         CGATGTTTCAAGCAATGATTTATGTGGGACGATTCCCACATCTGGACCATT
genomic: ACTGGGCCGATCCCAAGGGAACTTTCTGGAATATCTAGTCTCAAAGTTGTgtaagtaaat ... gctctttcagCGATGTTTCAAGCAATGATTTATGTGGGACGATTCCCACATCTGGACCATT
EST: gi|149001445|gb|EE038745.2|EE038745
EST:     ACTGGGCCGATCCCAAGGGAACTTTCTGGAATATCTAGTCTCAAAGTTGT                         CGATGTTTCAAGCAATGATTTATGTGGGACGATTCCCACATCTGGACCATT
genomic: ACTGGGCCGATCCCAAGGGAACTTTCTGGAATATCTAGTCTCAAAGTTGTgtaagtaaat ... gctctttcagCGATGTTTCAAGCAATGATTTATGTGGGACGATTCCCACATCTGGACCATT
EST: gi|166697897|gb|EG182072.1|EG182072
EST:     GTCTCAAAGTTGT                         CGATGTTTCAAGCAATGATTTATGTGGGACGATTCCCACATCTGGACCATT
genomic: GTCTCAAAGTTGTgtaagtaaat ... gctctttcagCGATGTTTCAAGCAATGATTTATGTGGGACGATTCCCACATCTGGACCATT
EST: gi|78081972|gb|DV510384.1|DV510384
EST:     ACTGGGCCGATCCCAAGGGAACTTTCTGGAATATCTAGTCTCAAAGTTGT                         GGATGTTTCAAGCAATGATTTATGTGGGACGATTCCCACATCTGGACCATT
genomic: ACTGGGCCGATCCCAAGGGAACTTTCTGGAATATCTAGTCTCAAAGTTGTgtaagtaaat ... gctctttcagCGATGTTTCAAGCAATGATTTATGTGGGACGATTCCCACATCTGGACCATT
EST: gi|71307337|gb|DR789855.1|DR789855
EST:     ACTGGGCCGATCCCAAGGGAACTTTCTGGAATATCTAGTCTCAAAGTTGT                         CGATGTTTCAAGCAATGATTTATGTGGGACGATTCCCACATCTGGACCATT
genomic: ACTGGGCCGATCCCAAGGGAACTTTCTGGAATATCTAGTCTCAAAGTTGTgtaagtaaat ... gctctttcagCGATGTTTCAAGCAATGATTTATGTGGGACGATTCCCACATCTGGACCATT
EST: gi|71421340|gb|DR805385.1|DR805385
EST:     ACTGGGCCGATCCCAAGGGAACTTTCTGGAATATCTAGTCTCAAAGTTGT                         CGATGTTTCAAGCAATGATTTATGTGGGACGATTCCCACTTCTGGACCATT
genomic: ACTGGGCCGATCCCAAGGGAACTTTCTGGAATATCTAGTCTCAAAGTTGTgtaagtaaat ... gctctttcagCGATGTTTCAAGCAATGATTTATGTGGGACGATTCCCACATCTGGACCATT
EST: gi|91052481|gb|EB162899.1|EB162899
EST:     ACTGGGCCGATCCCAAGGGAACTTTCTGGAATATCTAGTCTCAAAGTTGT                         CGATGTTTCAAGCAATGATTTATGTGGGACGATTCCCACATCTGGACCATT
genomic: ACTGGGCCGATCCCAAGGGAACTTTCTGGAATATCTAGTCTCAAAGTTGTgtaagtaaat ... gctctttcagCGATGTTTCAAGCAATGATTTATGTGGGACGATTCCCACATCTGGACCATT
EST: gi|89252147|gb|DY623933.1|DY623933
EST:     ACTGGGCCGATCCCAAGGGAACTTTCTGGAATATCTAGTCTCAAAGTTGT                         CGATGTTTCAAGCAATGATTTATGTGGGACGATTCCCACATCTGGACCATT
genomic: ACTGGGCCGATCCCAAGGGAACTTTCTGGAATATCTAGTCTCAAAGTTGTgtaagtaaat ... gctctttcagCGATGTTTCAAGCAATGATTTATGTGGGACGATTCCCACATCTGGACCATT
EST: gi|89756077|gb|DY686250.1|DY686250
EST:     ACTGGGGCGATCCCAAGGGAACTTTCTGGAATATCTAGTCTCAAAGTTGT                         CGATGTTTCAAGCAATGATTTATGTGGGACGATTCCCACATCTGGACCATT
genomic: ACTGGGCCGATCCCAAGGGAACTTTCTGGAATATCTAGTCTCAAAGTTGTgtaagtaaat ... gctctttcagCGATGTTTCAAGCAATGATTTATGTGGGACGATTCCCACATCTGGACCATT
EST: gi|71428581|gb|DR809631.1|DR809631
EST:     ACTGGGCCGATCCCAAGGGAACTTTCTGGAATATCTAGTCTCAAAGTTGT                         CGATGTTTCAAGCAATGATTTATGTGGGACGATTCCCACATCTGGACCATT
genomic: ACTGGGCCGATCCCAAGGGAACTTTCTGGAATATCTAGTCTCAAAGTTGTgtaagtaaat ... gctctttcagCGATGTTTCAAGCAATGATTTATGTGGGACGATTCCCACATCTGGACCATT
EST: gi|76013570|gb|DT940740.1|DT940740
EST:     ACTGGGCCGATCCCAAGGGAACTTTCTGGAATATCTAGTCTCAAAGTTGT                         CGATGTTTCAAGCAATGATTTATGTGGGACGATTCCCACATCTGGACCATT
genomic: ACTGGGCCGATCCCAAGGGAACTTTCTGGAATATCTAGTCTCAAAGTTGTgtaagtaaat ... gctctttcagCGATGTTTCAAGCAATGATTTATGTGGGACGATTCCCACATCTGGACCATT
EST: gi|93282736|gb|EB675000.1|EB675000
EST:     ACTGGGCCGATCCCAAGGGAACTTTCTGGAATATCTAGTCTCAAAGTTGT                         CGATGTTTCAAGCAATGATTTATGTGGGACGATTCCCACATCTGGACCATT
genomic: ACTGGGCCGATCCCAAGGGAACTTTCTGGAATATCTAGTCTCAAAGTTGTgtaagtaaat ... gctctttcagCGATGTTTCAAGCAATGATTTATGTGGGACGATTCCCACATCTGGACCATT
EST: gi|148933094|gb|EC876726.2|EC876726
EST:     ACTGGGCCGATCCCAAGGGAACTTTCTGGAATATCTAGTCTCAAAGTTGT                         CGATGTTTCAAGCAATGATTTATGTGGGACGATTCCCACATCTGGACCATT
genomic: ACTGGGCCGATCCCAAGGGAACTTTCTGGAATATCTAGTCTCAAAGTTGTgtaagtaaat ... gctctttcagCGATGTTTCAAGCAATGATTTATGTGGGACGATTCCCACATCTGGACCATT
EST: gi|211108196|gb|FL028202.1|FL028202
EST:     ACTGGGCCGATCCCAAGGGAACTTTCTGGAATATCTAGTCTCAAAGTTGT                         CGATGTTTCAAGCAATGATTTATGTGGGACGATTCCCACATCTGGACCATT
genomic: ACTGGGCCGATCCCAAGGGAACTTTCTGGAATATCTAGTCTCAAAGTTGTgtaagtaaat ... gctctttcagCGATGTTTCAAGCAATGATTTATGTGGGACGATTCCCACATCTGGACCATT
EST: gi|26456451|gb|CA828034.1|CA828034
EST:     GGGAACTTTCTGGAATATCTAGTCTCAAAGTTGT                         CGATGTTTCAAGCAATGATTTATGTGGGACGATTCCCACATCTGGACCATT
genomic: GGGAACTTTCTGGAATATCTAGTCTCAAAGTTGTgtaagtaaat ... gctctttcagCGATGTTTCAAGCAATGATTTATGTGGGACGATTCCCACATCTGGACCATT
EST: gi|149104283|gb|EE289721.2|EE289721
EST:     ACTGGGCCGATCCCAAGGGAACTTTCTGGAATATCTAGTCTCAAAGTTGT                         CGATGTTTCAAGCAATGATTTATGTGGGACGATTCCCACATCTGGACCATT
genomic: ACTGGGCCGATCCCAAGGGAACTTTCTGGAATATCTAGTCTCAAAGTTGTgtaagtaaat ... gctctttcagCGATGTTTCAAGCAATGATTTATGTGGGACGATTCCCACATCTGGACCATT
EST: gi|60394303|gb|DN227173.1|DN227173
EST:     ACTGGGCCGATCCCAAGGGAACTTTCTGGAATATCTAGTCTCAAAGTTGT                         CGATGTTTCAAGCAATGATTTATGTGGGACGATTCCCACATCTGGACCATT
genomic: ACTGGGCCGATCCCAAGGGAACTTTCTGGAATATCTAGTCTCAAAGTTGTgtaagtaaat ... gctctttcagCGATGTTTCAAGCAATGATTTATGTGGGACGATTCCCACATCTGGACCATT
EST: gi|71307336|gb|DR789854.1|DR789854
EST:     ACTGGGCCGATCCCAAGGGAACTTTCTGGAATATCTAGTCTCAAAGTTGT                         CGATGTTTCAAGCAATGATTTATGTGGGACGATTCCCACATCTGGACCATT
genomic: ACTGGGCCGATCCCAAGGGAACTTTCTGGAATATCTAGTCTCAAAGTTGTgtaagtaaat ... gctctttcagCGATGTTTCAAGCAATGATTTATGTGGGACGATTCCCACATCTGGACCATT
EST: gi|38688023|gb|CK145054.1|CK145054
EST:     ATCTAGTCTCAAAGTTGT                         CGATGTTTCAAGCAATGATTTATGTGGGACGATTCCCACATCTGGACCATT
genomic: ATCTAGTCTCAAAGTTGTgtaagtaaat ... gctctttcagCGATGTTTCAAGCAATGATTTATGTGGGACGATTCCCACATCTGGACCATT
EST: gi|74241262|gb|DT649176.1|DT649176
EST:     ACTGGGCCGATCCCAAGGGAACTTTCTGGAATATCTAGTCTCAAAGTTGT                         CGATGTTTCAAGCAATGATTTATGTGGGACGATTCCCACATCTGGACCATT
genomic: ACTGGGCCGATCCCAAGGGAACTTTCTGGAATATCTAGTCTCAAAGTTGTgtaagtaaat ... gctctttcagCGATGTTTCAAGCAATGATTTATGTGGGACGATTCCCACATCTGGACCATT
EST: gi|38688024|gb|CK145055.1|CK145055
EST:     ACTGGGCCGATCCCAAGGGAACTTTCTGGAATATCTAGTCTCAAAGTTGT                         CGATGTTTCAAGCAATGATTTATGTGGGACGATTCCCACATCTGGACCATT
genomic: ACTGGGCCGATCCCAAGGGAACTTTCTGGAATATCTAGTCTCAAAGTTGTgtaagtaaat ... gctctttcagCGATGTTTCAAGCAATGATTTATGTGGGACGATTCCCACATCTGGACCATT
EST: gi|211290374|gb|FL395526.1|FL395526
EST:     ACTGGGCCGATCCCAAGGGAACTTTCTGGAATATCTAGTCTCAAAGTTGT                         CGATGTTTCAAGCAATGATTTATGTGGGACGATTCCCACATCTGGACCATT
genomic: ACTGGGCCGATCCCAAGGGAACTTTCTGGAATATCTAGTCTCAAAGTTGTgtaagtaaat ... gctctttcagCGATGTTTCAAGCAATGATTTATGTGGGACGATTCCCACATCTGGACCATT
EST: gi|74241261|gb|DT649175.1|DT649175
EST:     ACTGGGCCGATCCCAAGGGAACTTTCTGGAATATCTAGTCTCAAAGTTGT                         CGATGTTTCAAGCAATGATTTATGTGGGACGATTCCCACATCTGGACCATT
genomic: ACTGGGCCGATCCCAAGGGAACTTTCTGGAATATCTAGTCTCAAAGTTGTgtaagtaaat ... gctctttcagCGATGTTTCAAGCAATGATTTATGTGGGACGATTCCCACATCTGGACCATT
EST: gi|91054725|gb|EB165143.1|EB165143
EST:     ACTGGGCCGATCCCAAGGGAACTTTCTGGAATATCTAGTCTCAAAGTTGT                         CGATGTTTCAAGCAATGATTTATGTGGGACGATTCCCACATCTGGACCATT
genomic: ACTGGGCCGATCCCAAGGGAACTTTCTGGAATATCTAGTCTCAAAGTTGTgtaagtaaat ... gctctttcagCGATGTTTCAAGCAATGATTTATGTGGGACGATTCCCACATCTGGACCATT
EST: gi|30087585|gb|CB885791.1|CB885791
EST:     ACTGGGCCGATCCCAAGGGAACTTTCTGGAATATCTAGTCTCAAAGTTGT                         CGATGTTTCAAGCAATGATTTATGTGGGACGATTCCCACATCTGGACCATT
genomic: ACTGGGCCGATCCCAAGGGAACTTTCTGGAATATCTAGTCTCAAAGTTGTgtaagtaaat ... gctctttcagCGATGTTTCAAGCAATGATTTATGTGGGACGATTCCCACATCTGGACCATT
EST: gi|71433639|gb|DR814689.1|DR814689
EST:     ACTGGGCCGATCCCAAGGGAACTTTCTGGAATATCTAGTCTCAAAGTTGT                         CGATGTTTCAAGCAATGATTTATGTGGGACGATTCCCACATCTGGACCATT
genomic: ACTGGGCCGATCCCAAGGGAACTTTCTGGAATATCTAGTCTCAAAGTTGTgtaagtaaat ... gctctttcagCGATGTTTCAAGCAATGATTTATGTGGGACGATTCCCACATCTGGACCATT
EST: gi|71421341|gb|DR805386.1|DR805386
EST:     ACTGGGCCGATCCCAAGGGAACTTTCTGGAATATCTAGTCTCAAAGTTGT                         CGATGTTTCAAGCAATGATTTATGTGGGACGATTCCCACATCTGGACCATT
genomic: ACTGGGCCGATCCCAAGGGAACTTTCTGGAATATCTAGTCTCAAAGTTGTgtaagtaaat ... gctctttcagCGATGTTTCAAGCAATGATTTATGTGGGACGATTCCCACATCTGGACCATT
EST: gi|149104284|gb|EE289722.2|EE289722
EST:     ACTGGGCCGATCCCAAAGGAACTTTCTGGAATATCTAGTCTCAAAGTTGT                         CGATGTTTCAAGCAATGATTTATGTGGGACGATTCCCACATCTGGGAC-AT
genomic: ACTGGGCCGATCCCAAGGGAACTTTCTGGAATATCTAGTCTCAAAGTTGTgtaagtaaat ... gctctttcagCGATGTTTCAAGCAATGATTTATGTGGGACGATTCCCACATCTGG-ACCAT
EST: gi|91051610|gb|EB162028.1|EB162028
EST:     ACTGGGCCGATCCCAAGGGAACTTTCTGGAATATCTAGTCTCAAAGTTGT                         CGATGTTTCAAGCAATGATTTATGTGGGGCGATTCCCACATCTGGACCATT
genomic: ACTGGGCCGATCCCAAGGGAACTTTCTGGAATATCTAGTCTCAAAGTTGTgtaagtaaat ... gctctttcagCGATGTTTCAAGCAATGATTTATGTGGGACGATTCCCACATCTGGACCATT
EST: gi|38688040|gb|CK145071.1|CK145071
EST:     GAACTTTCTGGAATATCTAGTCTCAAAGTTGT                         CGATGTTTCAAGCAATGATTTATGTGGGACGATTCCCACATCTGGACCATT
genomic: GAACTTTCTGGAATATCTAGTCTCAAAGTTGTgtaagtaaat ... gctctttcagCGATGTTTCAAGCAATGATTTATGTGGGACGATTCCCACATCTGGACCATT
EST: gi|71450092|gb|DR831142.1|DR831142
EST:     ACTGGGCCGATCCCAAGGGAACTTTCTGGAATATCTAGTCTCAAAGTTGT                         CGATGTTTCAAGCAATGATTTATGTGGGACGATTCCCACATCTGGACCATT
genomic: ACTGGGCCGATCCCAAGGGAACTTTCTGGAATATCTAGTCTCAAAGTTGTgtaagtaaat ... gctctttcagCGATGTTTCAAGCAATGATTTATGTGGGACGATTCCCACATCTGGACCATT
EST: gi|149076486|gb|EE165112.2|EE165112
EST:     ACTGGGCCGATCCCAAGGGAACTTTTTGGAATATCTAGTCTCAAAGTTGT                         CGATGTTTCAAGCAATGATTTATGTGGGACGATTCCCACATCTGGACCATT
genomic: ACTGGGCCGATCCCAAGGGAACTTTCTGGAATATCTAGTCTCAAAGTTGTgtaagtaaat ... gctctttcagCGATGTTTCAAGCAATGATTTATGTGGGACGATTCCCACATCTGGACCATT
EST: gi|91051618|gb|EB162036.1|EB162036
EST:     CTGGGCCGATCCCCAAGG-AACTTTCTGGAATATCTAGTCCCAAAGGTGT                         CGATGTTTCAAGCAATGATTTATGTGG
genomic: CTGGGCCGATCCC-AAGGGAACTTTCTGGAATATCTAGTCTCAAAGTTGTgtaagtaaat ... gctctttcagCGATGTTTCAAGCAATGATTTATGTGG
EST: gi|149076487|gb|EE165113.2|EE165113
EST:     ACTGGGCCGATCCCAAGGGAACTTTCTGGAATATCTAGTCTCAAAGTTGT                         CGATGTTTCAAGCAATGATTTATGTGGGACGATTCCCACATCTGGACCATT
genomic: ACTGGGCCGATCCCAAGGGAACTTTCTGGAATATCTAGTCTCAAAGTTGTgtaagtaaat ... gctctttcagCGATGTTTCAAGCAATGATTTATGTGGGACGATTCCCACATCTGGACCATT
EST: gi|78545153|gb|DV622651.1|DV622651
EST:     CCGATCCCAAGGGAACTTTCTGGAATATCTAGTCTCAAAGTTGT                         CGATGTTTCAAGCAATGATTTATGTGGGACGATTCCCACATCTGGACCATT
genomic: CCGATCCCAAGGGAACTTTCTGGAATATCTAGTCTCAAAGTTGTgtaagtaaat ... gctctttcagCGATGTTTCAAGCAATGATTTATGTGGGACGATTCCCACATCTGGACCATT
EST: gi|33468041|gb|CF245090.1|CF245090
EST:     ACTGGGCCGATCCCAAGGGAACTTTCTGGAATATCTAGTCTCAAAGTTGT                         CGATGTTTCAAGCAATGATTTATGTGGGACGATTCCCACATCTGGACCATT
genomic: ACTGGGCCGATCCCAAGGGAACTTTCTGGAATATCTAGTCTCAAAGTTGTgtaagtaaat ... gctctttcagCGATGTTTCAAGCAATGATTTATGTGGGACGATTCCCACATCTGGACCATT
EST: gi|78117159|gb|DV535546.1|DV535546
EST:     ACTGGGCCGATCCCAAGGGAACTTTCTGGAATATCTAGTCTCAAAGTTGT                         CGATGTTTCAAGCAATGATTTATGTGGGACGATTCCCACATCTGGACCATT
genomic: ACTGGGCCGATCCCAAGGGAACTTTCTGGAATATCTAGTCTCAAAGTTGTgtaagtaaat ... gctctttcagCGATGTTTCAAGCAATGATTTATGTGGGACGATTCCCACATCTGGACCATT
EST: gi|149101778|gb|EE287382.2|EE287382
EST:     ACTGGGCCGATCCCAAGGGAACTTTCTGGAATATCTAGTCTCAAAGTTGT                         CGATGTTTCAAGCAATGATTTATGTGGGACGATTCCCACATCTGGACCATT
genomic: ACTGGGCCGATCCCAAGGGAACTTTCTGGAATATCTAGTCTCAAAGTTGTgtaagtaaat ... gctctttcagCGATGTTTCAAGCAATGATTTATGTGGGACGATTCCCACATCTGGACCATT
EST: gi|89246857|gb|DY618644.1|DY618644
EST:     ACTGGGCCGATCCCAAGGGAACTTTCTGGAATATCTAGTTTCAAAGTTGT                         GGATGTTTCAAGCAATGATTTATGTGGGACGATTCCCACATCTGGACCATT
genomic: ACTGGGCCGATCCCAAGGGAACTTTCTGGAATATCTAGTCTCAAAGTTGTgtaagtaaat ... gctctttcagCGATGTTTCAAGCAATGATTTATGTGGGACGATTCCCACATCTGGACCATT
EST: gi|71422474|gb|DR805742.1|DR805742
EST:     CAAGGGAACTTTCTGGAATATCTAGTCTCAAAGTTGT                         CGATGTTTCAAGCAATGATTTATGTGGGACGATTCCCACATCTGGACCATT
genomic: CAAGGGAACTTTCTGGAATATCTAGTCTCAAAGTTGTgtaagtaaat ... gctctttcagCGATGTTTCAAGCAATGATTTATGTGGGACGATTCCCACATCTGGACCATT
EST: gi|149110630|gb|EE190518.2|EE190518
EST:     ACTGGGCCGATCCCAAGGGAACTTTCTGGAATATCTAGTCTCAAAGTTGT                         CGATGTTTCAAGCAATGATTTATGTGGGACGATTCCCACATCTGGACCATT
genomic: ACTGGGCCGATCCCAAGGGAACTTTCTGGAATATCTAGTCTCAAAGTTGTgtaagtaaat ... gctctttcagCGATGTTTCAAGCAATGATTTATGTGGGACGATTCCCACATCTGGACCATT
EST: gi|76013569|gb|DT940739.1|DT940739
EST:     ACTGGGCCGATCCCAAGGGAACTTTCTGGAATATCTAGTCTCAAAGTTGT                         CGATGTTTCAAGCAATGATTTATGTGGGACGATTCCCACTTCTGGACCATT
genomic: ACTGGGCCGATCCCAAGGGAACTTTCTGGAATATCTAGTCTCAAAGTTGTgtaagtaaat ... gctctttcagCGATGTTTCAAGCAATGATTTATGTGGGACGATTCCCACATCTGGACCATT
EST: gi|38688041|gb|CK145072.1|CK145072
EST:     ACTGGGCCGATCCCAAGGGAACTTTCTGGAATATCTAGTCTCAAAGTTGT                         CGATGTTTCAAGCAATGATTTATGTGGGACGATTCCCACATCTGGACCATT
genomic: ACTGGGCCGATCCCAAGGGAACTTTCTGGAATATCTAGTCTCAAAGTTGTgtaagtaaat ... gctctttcagCGATGTTTCAAGCAATGATTTATGTGGGACGATTCCCACATCTGGACCATT
EST: gi|78081973|gb|DV510385.1|DV510385
EST:     ACTGGGCCGATCCCCAGGGAACTTTCTGGAATATCTAGTCTCAAAGTTGT                         CGATGTTTCCAGCAATGATTTATGTGGGACGATTCCCACATCTGGACCATT
genomic: ACTGGGCCGATCCCAAGGGAACTTTCTGGAATATCTAGTCTCAAAGTTGTgtaagtaaat ... gctctttcagCGATGTTTCAAGCAATGATTTATGTGGGACGATTCCCACATCTGGACCATT
EST: gi|213191015|gb|FM195385.1|FM195385
EST:     ACTGGGCCGATCCCAAGGGAACTTTCTGGAATATCTAGTCTCAAAGTTGT                         CGATGTTTCAAGCAATGATTTATGTGGGACGATTCCCACATCTGGACCATT
genomic: ACTGGGCCGATCCCAAGGGAACTTTCTGGAATATCTAGTCTCAAAGTTGTgtaagtaaat ... gctctttcagCGATGTTTCAAGCAATGATTTATGTGGGACGATTCCCACATCTGGACCATT
EST: gi|50336223|gb|CO531349.1|CO531349
EST:     ACTGGGCCGATCCCAAGGGAACTTTCTGGAATATCTAGTCTCAAAGTTGT                         CGATGTTTCAAGCAATGATTTATGTGGGACGATTCCCACATCTGGACCATT
genomic: ACTGGGCCGATCCCAAGGGAACTTTCTGGAATATCTAGTCTCAAAGTTGTgtaagtaaat ... gctctttcagCGATGTTTCAAGCAATGATTTATGTGGGACGATTCCCACATCTGGACCATT
EST: gi|45847524|gb|CN071467.1|CN071467
EST:     ACTGGGCCGATCCCAAGGGAACCTTCTGGAATATCTAGTCTCAAAGTTGT                         CGATGTTTCAAGCAATGATTTATGTGGGACGATTCCCACATCTGGACCATT
genomic: ACTGGGCCGATCCCAAGGGAACTTTCTGGAATATCTAGTCTCAAAGTTGTgtaagtaaat ... gctctttcagCGATGTTTCAAGCAATGATTTATGTGGGACGATTCCCACATCTGGACCATT
EST: gi|71428580|gb|DR809630.1|DR809630
EST:     ACTGGGCCGATCCCAAGGGAACTTTCTGGAATATCTAGTCTCAAAGTTGT                         CGATGTTTCAAGCAATGATTTATGTGGGACGATTCCCACATCTGGACCATT
genomic: ACTGGGCCGATCCCAAGGGAACTTTCTGGAATATCTAGTCTCAAAGTTGTgtaagtaaat ... gctctttcagCGATGTTTCAAGCAATGATTTATGTGGGACGATTCCCACATCTGGACCATT
EST: gi|78117158|gb|DV535545.1|DV535545
EST:     ACTGGGCCGATCCCAAGGGAACTTTCTGGAATATCTAGTCTCAAAGTTGT                         CGATGTTTCAAGCAATGATTTATGTGGGACGATTCCCACATCTGGACCATT
genomic: ACTGGGCCGATCCCAAGGGAACTTTCTGGAATATCTAGTCTCAAAGTTGTgtaagtaaat ... gctctttcagCGATGTTTCAAGCAATGATTTATGTGGGACGATTCCCACATCTGGACCATT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 502

GCGGCTCAATGGCAATCATTTGACTGGGCCGATCCCAAGGGAACTTTCTGGAATATCTAGTCTCAAAGTTGTgtaagtaaat ... gctctttcagCGATGTTTCAAGCAATGATTTATGTGGGACGATTCCCACATCTGGACCATTTGAGCACATTCCTCTGAGCAA


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 373

GCGGCTCAATGGCAATCATTTGACTGGGCCGATCCCAAGGGAACTTTCTGGAATATCTAGTCTCAAAGTTGTgtaagtaaat ... gctctttcagCGATGTTTCAAGCAATGATTTATGTGGGACGATTCCCACATCTGGACCATTTGAGCACATTCCTCTGAGCAA


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 493

GCGGCTCAATGGCAATCATTTGACTGGGCCGATCCCAAGGGAACTTTCTGGAATATCTAGTCTCAAAGTTGTgtaagtaaat ... gctctttcagCGATGTTTCAAGCAATGATTTATGTGGGACGATTCCCACATCTGGACCATTTGAGCACATTCCTCTGAGCAA


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 396

GCGGCTCAATGGCAATCATTTGACTGGGCCGATCCCAAGGGAACTTTCTGGAATATCTAGTCTCAAAGTTGTgtaagtaaat ... gctctttcagCGATGTTTCAAGCAATGATTTATGTGGGACGATTCCCACATCTGGACCATTTGAGCACATTCCTCTGAGCAA




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctattctctccagattagtgctcaatttgacaatctacccaccttgctctttcagCGATGTTTCAAGCAATGATTTATGTGGGACGATTCCCACATCTGGACCATTTGAGCACATTCCTCTGAGCAA
                        atttgac  putative branch site (score: 396)
                                     cccaccttgctctttc  putative PPT
                     tcaattt  TA-rich tract