1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtaagtaaatatcaatttcaaatgtttagcattctattctctccagattagtgctcaatttgacaatctacccaccttgctctttcagCGATGTTTCAAGCAATGATTTATGTGGGACGATTCCCACATCTGGACCATTTGAGCACATTCCTCTGAGCAAGTAAGTTACATTCCTACTTTGCATCTTC
species | Zea mays |
transcript | GRMZM5G815009_T01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GTCTCAAAGTTGT CGATGTTTCAAGCAATGATTTATGTGGGACGATTCCCACATCTGGACCATTEST: gi|149104284|gb|EE289722.2|EE289722
genomic: GTCTCAAAGTTGTgtaagtaaat ... gctctttcagCGATGTTTCAAGCAATGATTTATGTGGGACGATTCCCACATCTGGACCATT
EST: ACTGGGCCGATCCCAAAGGAACTTTCTGGAATATCTAGTCTCAAAGTTGT CGATGTTTCAAGCAATGATTTATGTGGGACGATTCCCACATCTGGGAC-ATEST: gi|89756077|gb|DY686250.1|DY686250
genomic: ACTGGGCCGATCCCAAGGGAACTTTCTGGAATATCTAGTCTCAAAGTTGTgtaagtaaat ... gctctttcagCGATGTTTCAAGCAATGATTTATGTGGGACGATTCCCACATCTGG-ACCAT
EST: ACTGGGGCGATCCCAAGGGAACTTTCTGGAATATCTAGTCTCAAAGTTGT CGATGTTTCAAGCAATGATTTATGTGGGACGATTCCCACATCTGGACCATTEST: gi|93284383|gb|EB676647.1|EB676647
genomic: ACTGGGCCGATCCCAAGGGAACTTTCTGGAATATCTAGTCTCAAAGTTGTgtaagtaaat ... gctctttcagCGATGTTTCAAGCAATGATTTATGTGGGACGATTCCCACATCTGGACCATT
EST: ACTGGGCCGATCCCAAGGGAACTTTCTGGAATATCTAGTCTCAAAGTTGT CGATGTTTCAAGCAATGATTTATGTGGGACGATTCCCACATCTGGACCATTEST: gi|91054725|gb|EB165143.1|EB165143
genomic: ACTGGGCCGATCCCAAGGGAACTTTCTGGAATATCTAGTCTCAAAGTTGTgtaagtaaat ... gctctttcagCGATGTTTCAAGCAATGATTTATGTGGGACGATTCCCACATCTGGACCATT
EST: ACTGGGCCGATCCCAAGGGAACTTTCTGGAATATCTAGTCTCAAAGTTGT CGATGTTTCAAGCAATGATTTATGTGGGACGATTCCCACATCTGGACCATTEST: gi|91051618|gb|EB162036.1|EB162036
genomic: ACTGGGCCGATCCCAAGGGAACTTTCTGGAATATCTAGTCTCAAAGTTGTgtaagtaaat ... gctctttcagCGATGTTTCAAGCAATGATTTATGTGGGACGATTCCCACATCTGGACCATT
EST: CTGGGCCGATCCCCAAGG-AACTTTCTGGAATATCTAGTCCCAAAGGTGT CGATGTTTCAAGCAATGATTTATGTGGEST: gi|149101778|gb|EE287382.2|EE287382
genomic: CTGGGCCGATCCC-AAGGGAACTTTCTGGAATATCTAGTCTCAAAGTTGTgtaagtaaat ... gctctttcagCGATGTTTCAAGCAATGATTTATGTGG
EST: ACTGGGCCGATCCCAAGGGAACTTTCTGGAATATCTAGTCTCAAAGTTGT CGATGTTTCAAGCAATGATTTATGTGGGACGATTCCCACATCTGGACCATTEST: gi|149106063|gb|EE291719.2|EE291719
genomic: ACTGGGCCGATCCCAAGGGAACTTTCTGGAATATCTAGTCTCAAAGTTGTgtaagtaaat ... gctctttcagCGATGTTTCAAGCAATGATTTATGTGGGACGATTCCCACATCTGGACCATT
EST: ACTGGGCCGATCCCAAGGGAACTTTCTGGAATATCTAGTCTCAAAGTTGT CGATGTTTCAAGCAATGATTTATGTGGGACGATTCCCACATCTGGACCATTEST: gi|74240378|gb|DT648292.1|DT648292
genomic: ACTGGGCCGATCCCAAGGGAACTTTCTGGAATATCTAGTCTCAAAGTTGTgtaagtaaat ... gctctttcagCGATGTTTCAAGCAATGATTTATGTGGGACGATTCCCACATCTGGACCATT
EST: ACTGGGCCGATCCCAAGGGAACTTTCTGGAATATCTAGTCTCAAAGTTGT CGATGTTTCAAGCAATGATTTATGTGGGACGATTCCCACATCTGGACCATT
genomic: ACTGGGCCGATCCCAAGGGAACTTTCTGGAATATCTAGTCTCAAAGTTGTgtaagtaaat ... gctctttcagCGATGTTTCAAGCAATGATTTATGTGGGACGATTCCCACATCTGGACCATT
ctattctctccagattagtgctcaatttgacaatctacccaccttgctctttcagCGATGTTTCAAGCAATGATTTATGTGGGACGATTCCCACATCTGGACCATTTGAGCACATTCCTCTGAGCAAGTAAGTTACATTCCTACTTTGCATCTTC
atttgac putative branch site (score: 4)
cccaccttgctctttc putative PPT
tcaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtaaatatcaatttcaaatgtttagcattctattctctccagattagtgctcaatttgacaatctacccaccttgctctttcagCGATGTTTCAAGCAATGATTTATGTGGGACGATTCCCACATCTGGACCATTTGAGCACATTCCTCTGAGCAAGTAAGTTACATTCCTACTTTGCATCTTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG