1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...ttcactttggagttagattagtgtgcatatataggattcattagctccattaaatccttgtcacccaatgtgtacttcgtgtttgcgtgtgctgcttcagGTGCCAGCTCTCCAGAGATTCATGCGAAGTCGAGCACACATTCACCAGCAAACAGGTGTCCACATTACATCCTCAACTATCTACACTTCTACCTTACACA
species | Zea mays |
transcript | GRMZM5G814310_T01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CGGCAGCATTCATGCAACACCTGATTTTATATTTTTGGAACCGTTTTGAG GTGCCAGCTCTCCAGAGATTCATGCGAAGCCGAGCACACATTCACCAGCAAEST: gi|211054879|gb|FL422556.1|FL422556
genomic: CGGCAGCATTCATGCAGCACCTGATTTTATATTTTTGGAACCGTTTTGAGgtaagttaat ... gctgcttcagGTGCCAGCTCTCCAGAGATTCATGCGAAGTCGAGCACACATTCACCAGCAA
EST: CGGCAGCATTCATGCAACACCTGATTTTATATTTTTGGAACCGTTTTGAG GTGCCAGCTCTCCAGAGATTCATGCGAAGCCGAGCACACATTCACCAGCAAEST: gi|211393234|gb|FL418031.1|FL418031
genomic: CGGCAGCATTCATGCAGCACCTGATTTTATATTTTTGGAACCGTTTTGAGgtaagttaat ... gctgcttcagGTGCCAGCTCTCCAGAGATTCATGCGAAGTCGAGCACACATTCACCAGCAA
EST: CGGCAGCATTCATGCAACACCTGATTTTATATTTTTGGAACCGTTTTGAG GTGCCAGCTCTCCAGAGATTCATGCGAMSSCGGAGCACACATTCACCAGCAEST: gi|67010774|gb|CO439523.1|CO439523
genomic: CGGCAGCATTCATGCAGCACCTGATTTTATATTTTTGGAACCGTTTTGAGgtaagttaat ... gctgcttcagGTGCCAGCTCTCCAGAGATTCATGCGAAGTC-GAGCACACATTCACCAGCA
EST: CGGCAGCATTCATGCAGCACCTGATTTTATATTTTTGGAACCGTTTTGAG GTGCCAGCTCTCCAGAGATTCATGCGAAGTCGAGCACACATTCACCAGCAA
genomic: CGGCAGCATTCATGCAGCACCTGATTTTATATTTTTGGAACCGTTTTGAGgtaagttaat ... gctgcttcagGTGCCAGCTCTCCAGAGATTCATGCGAAGTCGAGCACACATTCACCAGCAA
tccattaaatccttgtcacccaatgtgtacttcgtgtttgcgtgtgctgcttcagGTGCCAGCTCTCCAGAGATTCATGCGAAGTCGAGCACACATTCACCAGCAAACAGGTGTCCACATTACATCCTCAACTATCTACACTTCTACCTTACACA
ctgcttc CT-rich tract
taaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttcactttggagttagattagtgtgcatatataggattcattagctccattaaatccttgtcacccaatgtgtacttcgtgtttgcgtgtgctgcttcagGTGCCAGCTCTCCAGAGATTCATGCGAAGTCGAGCACACATTCACCAGCAAACAGGTGTCCACATTACATCCTCAACTATCTACACTTCTACCTTACACA
- - - - - - - - - - - gtgcata
- - - - - - - - - - - - - - - - - - - - - agctcca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caatgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtttgc