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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactgtgttgtggcatggcattgtagtcctaatgcatggcttcttcattcttgaaagctactcattcggtaaccccatggatctgattttagtcacacttcattcagTTTAGGATCTGTGATGTGCCTTGGTGTCACCGCTGGTGCGTATGTTCTCACTCTCTTTGCG

Basic information

species Zea mays
transcript GRMZM5G813363_T01
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G813363_T01 (Zea mays), 3'ss of exon 4
lower sequence: LOC_Os05g10740.1 (Oryza sativa), 3'ss of exon 4
gtactgtgttgtggcatggcattgtagtcctaatgcatggcttcttcattcttgaaagctactcattcggtaaccccatggatctgattttagtcacacttcattcagTTTAGGATCTGTGATGTGCCTTGGTGTCACCGCTGGTGCGTATGTTCTCACTCTCTTTGCG
         |   |  | |||| ||||||| | | | | |     |  |||     ||||| |     |  |   | ||  ||  ||  ||  |||   ||  ||||| |||||||||||||||||||| ||||| || |||||||| ||||| |||||||| ||||| 
--------gtacagtttcgcatcgtagtccgagttcgttgtactctttttc-----agctagtggcatgtgacatcaatatatgagagctttttca---ttttttcagATTAGGATCTGTGATGTGCCTGGGTGTTACAGCTGGTGCCTATGTCCTCACTCTGTTTGCA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|74238192|gb|DT646106.1|DT646106
EST:     TCTGTTGATGATCTCGCTGATCAAGTCGCAGATGTGCTTGATTTCTTCAG                         TTTAGGATCTGTGATGTGCCTTGGTGTCACCGCTGGTGCGTATGTTCTCAC
genomic: TCTGTTGATGATCTCGCTGATCAAGTCGCAGATGTGCTTGATTTCTTCAGgtactgtgtt ... cttcattcagTTTAGGATCTGTGATGTGCCTTGGTGTCACCGCTGGTGCGTATGTTCTCAC
EST: gi|101387839|gb|EB815934.1|EB815934
EST:     TCTGTTGATGATCTCGCTGATCAAGTCGCAGATGTGCTTGATTTCTTCAG                         TTTAGGATCTGTGATGTGCCTTGGTGTCACCGCTGGTGCGTATGTTCTCAC
genomic: TCTGTTGATGATCTCGCTGATCAAGTCGCAGATGTGCTTGATTTCTTCAGgtactgtgtt ... cttcattcagTTTAGGATCTGTGATGTGCCTTGGTGTCACCGCTGGTGCGTATGTTCTCAC
EST: gi|101391594|gb|EB817733.1|EB817733
EST:     TCTGTTGATGATCTCGCTGATCAAGTCGCAGATGTGCTTGATTTCTTCAG                         TTTAGGATCTGTGATGTGCCTTGGTGTCACCGCTGGTGCGTATGTTCTCAC
genomic: TCTGTTGATGATCTCGCTGATCAAGTCGCAGATGTGCTTGATTTCTTCAGgtactgtgtt ... cttcattcagTTTAGGATCTGTGATGTGCCTTGGTGTCACCGCTGGTGCGTATGTTCTCAC
EST: gi|91047989|gb|EB158407.1|EB158407
EST:     TCTGTTGATGATCTCGCTGATCAAGTCGCAGATGTGCTTGATTTCTTCAG                         TTTAGGATCTGTGAT
genomic: TCTGTTGATGATCTCGCTGATCAAGTCGCAGATGTGCTTGATTTCTTCAGgtactgtgtt ... cttcattcagTTTAGGATCTGTGAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gaaagctactcattcggtaaccccatggatctgattttagtcacacttcattcagTTTAGGATCTGTGATGTGCCTTGGTGTCACCGCTGGTGCGTATGTTCTCACTCTCTTTGCG
                                             cttcattc  CT-rich tract
                               tgatttta  TA-rich tract