1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...ttgcaagttctaattaacttatgcttcatttttcttatctttggttcgttgaacatcgatatcatgcatttatctgtttgtcataaatgcttgcattcagGGAGCTTGGTATTGGAATAGTTCCATATAGCCCACTTGGCCGTGGCTTCTTTGCTGGCAGGGCAGCTGTAGAACGTGTTCCATCAGAAAGTCTATTG
species | Zea mays |
transcript | GRMZM5G813143_T02 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TGGTCACTATGGACCAGAGATATAGAGGAAGATATAATTCCAGTCTGCAG GGAGCTTGGTATTGGAATAGTTCCATATAGCCCACTTGGCCGTGGCTTCTTEST: gi|76021183|gb|DT948353.1|DT948353
genomic: TGGTCACTATGGACCAGAGATATAGAGGAAGATATAATTCCAGTCTGCAGgttcatcccc ... ttgcattcagGGAGCTTGGTATTGGAATAGTTCCATATAGCCCACTTGGCCGTGGCTTCTT
EST: TGGTCACTATGGACCAGAGATATAGAGGAAGATATAATTCCAGTCTGCAG GGAGCTTGGTATTGGAATAGTTCCATATAGCCCACTTGGCCGTGGCTTCTTEST: gi|91875442|gb|EB405399.1|EB405399
genomic: TGGTCACTATGGACCAGAGATATAGAGGAAGATATAATTCCAGTCTGCAGgttcatcccc ... ttgcattcagGGAGCTTGGTATTGGAATAGTTCCATATAGCCCACTTGGCCGTGGCTTCTT
EST: GAGATATAGAGGAAGATATAATTCCAGTCTGCAG GGAGC-TGGTATTGGAATAGTTCCATATAGCCCACTGGGCCGTGGCTTCTTEST: gi|78114482|gb|DV532871.1|DV532871
genomic: GAGATATAGAGGAAGATATAATTCCAGTCTGCAGgttcatcccc ... ttgcattcagGGAGCTTGGTATTGGAATAGTTCCATATAGCCCACTTGGCCGTGGCTTCTT
EST: TGGTCACTATGGACCAGAGATATAGAGGAAGATATAATTCCAGTCTGCAG GGAGCTTGGTATTGGAATAGTTCCATATAGCCCACTTGGCCGTGGCTTCTTEST: gi|89761100|gb|DY689250.1|DY689250
genomic: TGGTCACTATGGACCAGAGATATAGAGGAAGATATAATTCCAGTCTGCAGgttcatcccc ... ttgcattcagGGAGCTTGGTATTGGAATAGTTCCATATAGCCCACTTGGCCGTGGCTTCTT
EST: TGGTCACTATGGACCAGAGATATAGAGGAAGATATAATTCCAGTCTGCAG GGAGCTTGGTATTGGAATAGTTCCATATAGCCCACTTGGCCGTGGCTTCTTEST: gi|76288051|gb|DV027619.1|DV027619
genomic: TGGTCACTATGGACCAGAGATATAGAGGAAGATATAATTCCAGTCTGCAGgttcatcccc ... ttgcattcagGGAGCTTGGTATTGGAATAGTTCCATATAGCCCACTTGGCCGTGGCTTCTT
EST: TGGTCACTATGGACCAGAGATATAGAGGAAGATATAATTCCAGTCTGCAG GGAGCTTGGTATTGGAATAGTTCCATATAGCCCACTTGGCCGTGGCTTCTTEST: gi|101392432|gb|EB818145.1|EB818145
genomic: TGGTCACTATGGACCAGAGATATAGAGGAAGATATAATTCCAGTCTGCAGgttcatcccc ... ttgcattcagGGAGCTTGGTATTGGAATAGTTCCATATAGCCCACTTGGCCGTGGCTTCTT
EST: ATATAGAGGAAGATATAATTCCAGTCTGCAG GGAGCGTGGTATTGGAATAGTTCCATATAGCCCACTTGGCCGTGGCTTCTTEST: gi|89755224|gb|DY685733.1|DY685733
genomic: ATATAGAGGAAGATATAATTCCAGTCTGCAGgttcatcccc ... ttgcattcagGGAGCTTGGTATTGGAATAGTTCCATATAGCCCACTTGGCCGTGGCTTCTT
EST: AGAGATATAGAGGAAGATATAATTCCAGTCTGCAG GGAGCTTGGTATTGGAATAGTTCCATATAGCCCACTTGGCCGTGGCTTCTTEST: gi|76011255|gb|DT938425.1|DT938425
genomic: AGAGATATAGAGGAAGATATAATTCCAGTCTGCAGgttcatcccc ... ttgcattcagGGAGCTTGGTATTGGAATAGTTCCATATAGCCCACTTGGCCGTGGCTTCTT
EST: TGGTCACTATGGACCAGAGATATAGAGGAAGATATAATTCCAGTCTGCAG GGAGCTTGGTATTGGAATAGTTCCATATAGCCCACTTGGCCGTGGCTTCTTEST: gi|60355056|gb|DN222029.1|DN222029
genomic: TGGTCACTATGGACCAGAGATATAGAGGAAGATATAATTCCAGTCTGCAGgttcatcccc ... ttgcattcagGGAGCTTGGTATTGGAATAGTTCCATATAGCCCACTTGGCCGTGGCTTCTT
EST: TGGTCACTATGGACCAGAGATATAGAGGAAGATATAATTCCAGTCTGCAG GGAGCTTGGTATTGGAATAGTTCCATATAGCCCACTTGGCCGTGGCTTCTTEST: gi|91873436|gb|EB403393.1|EB403393
genomic: TGGTCACTATGGACCAGAGATATAGAGGAAGATATAATTCCAGTCTGCAGgttcatcccc ... ttgcattcagGGAGCTTGGTATTGGAATAGTTCCATATAGCCCACTTGGCCGTGGCTTCTT
EST: AGAGATATAGAGGAAGATATAATTCCAGTCTGCAG GGAGCTTGGTATTGGAATAGTTCCATATAGCCCACTTGGCCGTGGCTTCTTEST: gi|78112031|gb|DV530427.1|DV530427
genomic: AGAGATATAGAGGAAGATATAATTCCAGTCTGCAGgttcatcccc ... ttgcattcagGGAGCTTGGTATTGGAATAGTTCCATATAGCCCACTTGGCCGTGGCTTCTT
EST: GAAGATATAATTCCAGTCTGCAG GGAGCTTGGTATTGGAATAGTTCCATATAGCCCACTTGGCCGTGGCTTCTTEST: gi|60341512|gb|DN208485.1|DN208485
genomic: GAAGATATAATTCCAGTCTGCAGgttcatcccc ... ttgcattcagGGAGCTTGGTATTGGAATAGTTCCATATAGCCCACTTGGCCGTGGCTTCTT
EST: GTCACTATGGACCAGAGATATAGAGGAAGATATAATTCCAGTCTGCAG GGAGCTTGGTATTGGAATAGTTCCATATAGCCCACTTGGCCGTGGCTTCTT
genomic: GTCACTATGGACCAGAGATATAGAGGAAGATATAATTCCAGTCTGCAGgttcatcccc ... ttgcattcagGGAGCTTGGTATTGGAATAGTTCCATATAGCCCACTTGGCCGTGGCTTCTT
tcgttgaacatcgatatcatgcatttatctgtttgtcataaatgcttgcattcagGGAGCTTGGTATTGGAATAGTTCCATATAGCCCACTTGGCCGTGGCTTCTTTGCTGGCAGGGCAGCTGTAGAACGTGTTCCATCAGAAAGTCTATTG
atttatct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgcaagttctaattaacttatgcttcatttttcttatctttggttcgttgaacatcgatatcatgcatttatctgtttgtcataaatgcttgcattcagGGAGCTTGGTATTGGAATAGTTCCATATAGCCCACTTGGCCGTGGCTTCTTTGCTGGCAGGGCAGCTGTAGAACGTGTTCCATCAGAAAGTCTATTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
ttgcaag
- - - - - - - - - - -tgcttca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tcatgca