1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...taccctgtacaatgtaaataatccatgcattcaagacgttgtccacgggatatctcattgaattagctctttctcaagacactgttgctttgttggtaagGTCTACAATGCCCTGGGGGTCAGCTACAAGCGAGAGAACAAACTTGACAAGGCGATTCAGCAGTTTCAGAAGGCCGTGGAGCTCCAGCCAGGCTATGTGA
species | Zea mays |
transcript | GRMZM5G809292_T02 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TGCAGCAAGCAATTGACAAATGGGACAGAGACGAGCAAGATCTTGCGCAG GTCTACAATGCCCTGGGGGTCAGCTACAAGCGAGAGAACAAACTTGACAAGEST: gi|71301886|gb|DR787012.1|DR787012
genomic: TGCAGCAAGCAATTGACAAATGGGACAGAGACGAGCAAGATCTTGCGCAGgttagctatg ... tgttggtaagGTCTACAATGCCCTGGGGGTCAGCTACAAGCGAGAGAACAAACTTGACAAG
EST: TGCAGCAAGCAATTGACAAATGGGACAGAGACGAGCAAGATCTTGCGCAG GTCTACAATGCCCTGNGGGTCAGCTACAAGCGAGAGAACAAACTTGACAAGEST: gi|76281110|gb|DV020678.1|DV020678
genomic: TGCAGCAAGCAATTGACAAATGGGACAGAGACGAGCAAGATCTTGCGCAGgttagctatg ... tgttggtaagGTCTACAATGCCCTGGGGGTCAGCTACAAGCGAGAGAACAAACTTGACAAG
EST: TGCAGCAAGCAATTGACAAATGGGACAGAGACGAGCAAGATCTTGCGCAG GTCTACAATGCCCTGGGGGTCAGCTACAAGCGAGAGAACAAACTTGACAAGEST: gi|211407779|gb|FL477834.1|FL477834
genomic: TGCAGCAAGCAATTGACAAATGGGACAGAGACGAGCAAGATCTTGCGCAGgttagctatg ... tgttggtaagGTCTACAATGCCCTGGGGGTCAGCTACAAGCGAGAGAACAAACTTGACAAG
EST: TGCAGCAAGCAATTGACAAATGGGACAGAGACGAGCAAGATCTTGCGCAG GTCTACAATGCCCTGGGGGTCAGCTACAAGCGAGAGAACAAACTTGACAAGEST: gi|32865446|gb|CF005128.1|CF005128
genomic: TGCAGCAAGCAATTGACAAATGGGACAGAGACGAGCAAGATCTTGCGCAGgttagctatg ... tgttggtaagGTCTACAATGCCCTGGGGGTCAGCTACAAGCGAGAGAACAAACTTGACAAG
EST: TGCAGCAAGCAATTGACAAATGGGTCAGAGACGAGCAAGATCTTGCGCAG GTCTACAATGCCCTGGGGGTCAGCTACAAGCGAGAGAACAAACTTGCCAAGEST: gi|91872953|gb|EB402910.1|EB402910
genomic: TGCAGCAAGCAATTGACAAATGGGACAGAGACGAGCAAGATCTTGCGCAGgttagctatg ... tgttggtaagGTCTACAATGCCCTGGGGGTCAGCTACAAGCGAGAGAACAAACTTGACAAG
EST: TGCAGCAAGCAATTGACAAATGGGACAGAGACGAGCAAGATCTTGCGCAG GTCTACAATGCCCTGGGGGTCAGCTACAAGCGAGAGAACAAACTTGACAAGEST: gi|71766161|gb|DR964098.1|DR964098
genomic: TGCAGCAAGCAATTGACAAATGGGACAGAGACGAGCAAGATCTTGCGCAGgttagctatg ... tgttggtaagGTCTACAATGCCCTGGGGGTCAGCTACAAGCGAGAGAACAAACTTGACAAG
EST: TGCAGCAAGCAATTGACAAATGGGACAGAGACGAGCAAGATCTTGCGCAG GTCTACAATGCCCTGNGGGTCAGCTACAAGCGAGAGAACAAACTTGACAAGEST: gi|211491317|gb|FL191819.1|FL191819
genomic: TGCAGCAAGCAATTGACAAATGGGACAGAGACGAGCAAGATCTTGCGCAGgttagctatg ... tgttggtaagGTCTACAATGCCCTGGGGGTCAGCTACAAGCGAGAGAACAAACTTGACAAG
EST: TGCAGCAAGCAATTGACAAATGGGACAGAGACGAGCAAGATCTTGCGCAG GTCTACAATGCCCTGGGGGGTCAGCTACEST: gi|78087661|gb|DV516054.1|DV516054
genomic: TGCAGCAAGCAATTGACAAATGGGACAGAGACGAGCAAGATCTTGCGCAGgttagctatg ... tgttggtaagGTCTACAATGCCCTGGGGG-TCAGCTAC
EST: TGCAGCAAGCAATTGACAAATGGGACAGAGACGAGCAAGATCTTGCGCAG GTCTACAATGCCCTGNGGGTCAGCTACAAGCGAGAGAACAA-CTTGACAAGEST: gi|76916193|gb|DV166281.1|DV166281
genomic: TGCAGCAAGCAATTGACAAATGGGACAGAGACGAGCAAGATCTTGCGCAGgttagctatg ... tgttggtaagGTCTACAATGCCCTGGGGGTCAGCTACAAGCGAGAGAACAAACTTGACAAG
EST: TGCAGCAAGCAATTGACAAATGGGACAGAGACGAGCAAGATCTTGCGCAG GTCTACAATGCCCTGGGGGTCAGCTACAAGCGAGAGAACAAACTTGACAAGEST: gi|45847367|gb|CN071310.1|CN071310
genomic: TGCAGCAAGCAATTGACAAATGGGACAGAGACGAGCAAGATCTTGCGCAGgttagctatg ... tgttggtaagGTCTACAATGCCCTGGGGGTCAGCTACAAGCGAGAGAACAAACTTGACAAG
EST: TGCAGCAAGCAATTGACAAATGGGACAGAGACGAGCAAGATCTTGCGCAG GTCTACAATGCC-TGGGGGTCAGCTACAAGCGAGAGAACAAACTTGACAAGEST: gi|211407780|gb|FL477835.1|FL477835
genomic: TGCAGCAAGCAATTGACAAATGGGACAGAGACGAGCAAGATCTTGCGCAGgttagctatg ... tgttggtaagGTCTACAATGCCCTGGGGGTCAGCTACAAGCGAGAGAACAAACTTGACAAG
EST: TGCAGCAAGCAATTGACAAATGGGACAGAGACGAGCAAGATCTTGCGCAG GTCTACAATGCCCTGGGGGTCAGCTACAAGCGAGAGAACAAACTTGACAAG
genomic: TGCAGCAAGCAATTGACAAATGGGACAGAGACGAGCAAGATCTTGCGCAGgttagctatg ... tgttggtaagGTCTACAATGCCCTGGGGGTCAGCTACAAGCGAGAGAACAAACTTGACAAG
cgggatatctcattgaattagctctttctcaagacactgttgctttgttggtaagGTCTACAATGCCCTGGGGGTCAGCTACAAGCGAGAGAACAAACTTGACAAGGCGATTCAGCAGTTTCAGAAGGCCGTGGAGCTCCAGCCAGGCTATGTGA
ttgcttt CT-rich tract
attgaatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taccctgtacaatgtaaataatccatgcattcaagacgttgtccacgggatatctcattgaattagctctttctcaagacactgttgctttgttggtaagGTCTACAATGCCCTGGGGGTCAGCTACAAGCGAGAGAACAAACTTGACAAGGCGATTCAGCAGTTTCAGAAGGCCGTGGAGCTCCAGCCAGGCTATGTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT