1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...acattctggagttgtaaaaagtcaaactggtgggctctttaaggtagaataactacagttcatacttcctatttctgattttgatggtctcatcttgcagGATGATGAAAGAATGGTCACAGAAGAAGAAGGTCTTGCTTTTGCTGAAGAATCTGGTTGTCTGTTTCTTGAGAGCAGTGCAAAAACACGAGAAAATGTTG
species | Zea mays |
transcript | GRMZM5G809265_T02 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CANCAANCAAAGACTGCATAAAAATGCTTGTTGGAAACAAAGTTGACAAG GATGATGAAAGAATGGTCACAGAAGAAGAAGGTCTTGCTTTTGCTGAAGAAEST: gi|211287343|gb|FL459821.1|FL459821
genomic: CAACAAACAAAGACTGCATAAAAATGCTTGTTGGAAACAAAGTTGACAAGgtaccatctc ... catcttgcagGATGATGAAAGAATGGTCACAGAAGAAGAAGGTCTTGCTTTTGCTGAAGAA
EST: CAACAAACAAAGACTGCATAAAAATGCTTGTTGGAAACAAAGTTGACAAG GATGATGAAAGAATGGTCACAGAAGAAGAAGGTCTTGCTTTTGCTGAAGAAEST: gi|78021708|gb|DV490095.1|DV490095
genomic: CAACAAACAAAGACTGCATAAAAATGCTTGTTGGAAACAAAGTTGACAAGgtaccatctc ... catcttgcagGATGATGAAAGAATGGTCACAGAAGAAGAAGGTCTTGCTTTTGCTGAAGAA
EST: CAACAAACAAAGACTGCATAAAAATGCTTGTTGGAAACAAAGTTGACAAG GATGATGAAAGAATGGTCACAGAAGAAGAAGGTCTTGCTTTTGCTGAAGAAEST: gi|211183625|gb|FL445775.1|FL445775
genomic: CAACAAACAAAGACTGCATAAAAATGCTTGTTGGAAACAAAGTTGACAAGgtaccatctc ... catcttgcagGATGATGAAAGAATGGTCACAGAAGAAGAAGGTCTTGCTTTTGCTGAAGAA
EST: CAACAAACAAAGACTGCATAAAAATGCTTGTTGGAAACAAAGTTGACAAG GATGATGAAAGAATGGTCACAGAAGAAGAAGGTCTTGCTTTTGCTGAAGAAEST: gi|211289066|gb|FL443482.1|FL443482
genomic: CAACAAACAAAGACTGCATAAAAATGCTTGTTGGAAACAAAGTTGACAAGgtaccatctc ... catcttgcagGATGATGAAAGAATGGTCACAGAAGAAGAAGGTCTTGCTTTTGCTGAAGAA
EST: GTTGGAAACAAAGTTGACAAG GATGATGAAAGAATGGTCACAGAAGAAGAAGGTCTTGCTTTTGCTGAAGAAEST: gi|211479208|gb|FL282801.1|FL282801
genomic: GTTGGAAACAAAGTTGACAAGgtaccatctc ... catcttgcagGATGATGAAAGAATGGTCACAGAAGAAGAAGGTCTTGCTTTTGCTGAAGAA
EST: CAACAAACAAAGACTGCATAAAAATGCTTGTTGGAAACAAAGTTGACAAG GATGATGAAAGAATGGTCACAGAAGAAGAAGGTCTTGCTTTTGCTGAAGAAEST: gi|12968810|gb|BG265846.1|BG265846
genomic: CAACAAACAAAGACTGCATAAAAATGCTTGTTGGAAACAAAGTTGACAAGgtaccatctc ... catcttgcagGATGATGAAAGAATGGTCACAGAAGAAGAAGGTCTTGCTTTTGCTGAAGAA
EST: CAACAAACAAAGACTGCATAAAAATGCTTGTTGGAAACAAAGTTGACAAG GATGATGAAAGAATGGTCACAGAAGAAGAAGGTCTTGCTTTTGCTGAAGAA
genomic: CAACAAACAAAGACTGCATAAAAATGCTTGTTGGAAACAAAGTTGACAAGgtaccatctc ... catcttgcagGATGATGAAAGAATGGTCACAGAAGAAGAAGGTCTTGCTTTTGCTGAAGAA
agaataactacagttcatacttcctatttctgattttgatggtctcatcttgcagGATGATGAAAGAATGGTCACAGAAGAAGAAGGTCTTGCTTTTGCTGAAGAATCTGGTTGTCTGTTTCTTGAGAGCAGTGCAAAAACACGAGAAAATGTTG
tctcatctt CT-rich tract
attttgat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acattctggagttgtaaaaagtcaaactggtgggctctttaaggtagaataactacagttcatacttcctatttctgattttgatggtctcatcttgcagGATGATGAAAGAATGGTCACAGAAGAAGAAGGTCTTGCTTTTGCTGAAGAATCTGGTTGTCTGTTTCTTGAGAGCAGTGCAAAAACACGAGAAAATGTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
-cattctg
- - - - - - -gtaaaaag
- - - - - - - - - - - - - ctggtgg
- - - - - - - - - - - - - - - - - - - - - - - - - aactaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tttgatg