Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...actttcaaaaactcaatcatctgtcttttcttcaacaaatattaaagcgccaataaatgatctatgctggaagctgatgtaatttgtattactcttgcagACAGATTGGGATCTAAGATTAGCATGTCTTCTTCTATATGCATTTGATATAGAAGACAACTTTTGGCAGTTATATTCTGATTTTTTGCCAAGTGTTGATG

Basic information

species Zea mays
transcript GRMZM5G807767_T04
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G807767_T03 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os05g50980.1 (Oryza sativa), 3'ss of exon 3
-act-ttcaaaaactcaatcatctgtcttttcttcaacaaatattaaagcgccaataaatgatctatgctggaagctgatgtaatttgtattactcttgcagACAGATTGGGATCTAAGATTAGCATGTCTTCTTCTATATGCATTTGATATAGAAGACAACTTTTGGCAGTTATATTCTGATTTTTTGCCAAGTGTTGATG
 | |  |||| |  |  | | | | |  || |||||     | | |||||  || ||| |||| ||  ||| |  || | | ||| ||||   |||||||||||||||||||||||||| ||||| || |||||||| |||||||||||| |||||||||||||||||||| |||||  |||||||||||| ||||||||||
tattactcaacacttgcaacctgttttcttccttcatgcggtgtcaaagcttca-taagtgatgtagactgcatcctaacgcaatctgtacc-ctcttgcagACAGATTGGGATCTAAGGTTAGCTTGCCTTCTTCTCTATGCATTTGATGTAGAAGACAACTTTTGGCAGCTATATGGTGATTTTTTGCCTAGTGTTGATG

upper sequence: GRMZM5G807767_T03 (Zea mays), 3'ss of exon 3
lower sequence: GLYMA15G16830.1 (Glycine max), 3'ss of exon 4
-----------------------------------------------------------------------------------acttt-caaaaactcaatcatctgtcttttcttcaacaaa--tattaaagcgccaataaatgatctatgctggaagctgatgtaatt---tgtattactcttgcagACAGATTGGGATCTAAGATTAGCATGTCTTCTTCTATATGCATTTGATATAGAAGACAACTTTTGGCAGTTATATTCTGATTTTTTGCCAAGTGTTGATG
                                                                                   || || | ||      | | | ||| ||  ||       |  |  || |     || ||||| |||           | ||||||||      ||   | | ||||||||||||||| ||||| |||||||| |||||  |||||||||||||    |||| |||||||||||| || |||   || || || || ||||  ||||
gtaattactattctcttctaagttcatttgttcataataagatataaccaattggttgttttcgcttttcatgataaatacatacgttaccaatgtgtcaccctttgttttaactgtgttgtacctgctacaaaagtaaaaaatgttctggttatctgcttaatgtaattgtgcaaatctttgtggcagACAGATTGGGACCTAAGGTTAGCATGCCTTCTCTTATATGCATTTGACTGTGAAGGCAACTTTTGGCAATTGTATGGCGACTTCTTACCGAGTGCAGATG

upper sequence: GRMZM5G807767_T03 (Zea mays), 3'ss of exon 3
lower sequence: GLYMA09G05510.1 (Glycine max), 3'ss of exon 4
------------------------------------------------------------------------------------acttt-caaaaactcaatcatctgtcttttcttcaacaaatattaaagcgccaataaatgatctatgctggaagctgatgtaatt---tgtattactcttgcagACAGATTGGGATCTAAGATTAGCATGTCTTCTTCTATATGCATTTGATATAGAAGACAACTTTTGGCAGTTATATTCTGATTTTTTGCCAAGTGTTGATG
                                                                                    || || | ||      | | | ||| ||  ||     |  |  || |     || ||||| |||           | ||||||||      ||   | | ||||||||||||||| ||||| |||||||| |||||  |||| |||||||||   |||| |||||||||||| || |||   || || || || ||||  ||||
gtaattacaatctcttctaagttcatttcataataagatataaccaatttgcttggttgttttcacttttcatgataaatacatacattaccaatgtatcaccctttgttttaactattgtacctgctacaaaagtaaaaaatgttctggttatctgcttaatgtaattgtgcaaatctttgtggcagACAGATTGGGACCTAAGGTTAGCATGCCTTCTCTTATACGCATTTGATTGCGAAGGCAACTTTTGGCAATTGTATGGCGACTTCTTACCGAGTGCAGATG

upper sequence: GRMZM5G807767_T03 (Zea mays), 3'ss of exon 3
lower sequence: Vv01s0011g01080.t01 (Vitis vinifera), 3'ss of exon 4
---actttcaaaaactcaa--tcatctgtcttttcttcaacaaatattaaagcgccaataaatgatctatgctggaagctgatgtaatttgtattactcttgcagACAGATTGGGATCTAAGATTAGCATGTCTTCTTCTATATGCATTTGATATAGAAGACAACTTTTGGCAGTTATATTCTGATTTTTTGCCAAGTGTTGATG
     |       || |||  | ||   | |  |  | ||   |  || | |   |  |   ||      | |   | ||   ||| ||||    ||| | ||||||||||||||||||  | |||||||| |||||| | | ||||||||||  ||| || ||||| |||||| |||||  ||||||||| || ||||  |  |
ttggttgatgggtacacaaagttataaatataattctgaaatgaagttgatggctctttttgtgtcactggttcttaacttcggta-tttg----actgtggcagACAGATTGGGATCTGCGGTTAGCATGCCTTCTTTTGTTTGCATTTGATCAAGAGGATAACTTCTGGCAGCTATATGGTGATTTTTTACCTAGTGAAGGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agcgccaataaatgatctatgctggaagctgatgtaatttgtattactcttgcagACAGATTGGGATCTAAGATTAGCATGTCTTCTTCTATATGCATTTGATATAGAAGACAACTTTTGGCAGTTATATTCTGATTTTTTGCCAAGTGTTGATG
                          agctgat  putative branch site (score: 4)
                                           ttactctt  putative PPT
                               atgtaatttgtatta  TA-rich tract