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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatcaaaaagctaacggaaagtatatacctctgctgtgtccttttcttaggaacctccttatacttgattctgctgtttgaatgaattcatatgcctgcctttctagGAAGATCTAATGGAACTAGAAGATGAAGATCTTGCTTCACAAATGTTAAAACACCAGGAACGAGCAATTGACTTTTGGCAAAAGCATTGG

Basic information

species Zea mays
transcript GRMZM5G807767_T03
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211020790|gb|FL433478.1|FL433478
EST:     TTTG-TGCTGGCACCAAAG                         GAAGATCTTATGGAACTAGAAGATGAAGATCTTGCTTCACAAATGTTAAAA
genomic: TTTGCTGCTGGCACCAAAGgtatcaaaaa ... gcctttctagGAAGATCTAATGGAACTAGAAGATGAAGATCTTGCTTCACAAATGTTAAAA
EST: gi|149101095|gb|EE187199.2|EE187199
EST:     ATTTTTTGCCAAGTGTTGATGAATGCACTAGTTTGCTGCTGGCACCAAAG                         GAAGATCTAATGGAACTAGAAGATGAAGATCTTGCTTCACAAATGTTAAAA
genomic: ATTTTTTGCCAAGTGTTGATGAATGCACTAGTTTGCTGCTGGCACCAAAGgtatcaaaaa ... gcctttctagGAAGATCTAATGGAACTAGAAGATGAAGATCTTGCTTCACAAATGTTAAAA
EST: gi|13557817|gb|BG549173.1|BG549173
EST:     ATTTTTTGCCAAGTGTTGATGAATGCACTAGTTTGCTGCTGGCACCAAAG                         GAAGATCTAATGGAACTAGAAGATGAAGATCTTGCTTCACAAATGTTAAAA
genomic: ATTTTTTGCCAAGTGTTGATGAATGCACTAGTTTGCTGCTGGCACCAAAGgtatcaaaaa ... gcctttctagGAAGATCTAATGGAACTAGAAGATGAAGATCTTGCTTCACAAATGTTAAAA
EST: gi|91051727|gb|EB162145.1|EB162145
EST:     ATTTTTTGCCAAGTGTTGATGAATGCACTAGTTTGCTGCTGGCACCAAAG                         GAAGATCTAATGGAACTAGAAGATGAAGATCTTGCTTCACAAATGTTAAAA
genomic: ATTTTTTGCCAAGTGTTGATGAATGCACTAGTTTGCTGCTGGCACCAAAGgtatcaaaaa ... gcctttctagGAAGATCTAATGGAACTAGAAGATGAAGATCTTGCTTCACAAATGTTAAAA
EST: gi|149029834|gb|EE286274.2|EE286274
EST:     ATTTTTTGCCAAGTGTTGATGAATGCACTAGTTTGCTGCTGGCACCAAAG                         GAAGATCTAATGGAACTAGAAGATGAAGATCTTGCTTCACAAATGTTAAAA
genomic: ATTTTTTGCCAAGTGTTGATGAATGCACTAGTTTGCTGCTGGCACCAAAGgtatcaaaaa ... gcctttctagGAAGATCTAATGGAACTAGAAGATGAAGATCTTGCTTCACAAATGTTAAAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acctccttatacttgattctgctgtttgaatgaattcatatgcctgcctttctagGAAGATCTAATGGAACTAGAAGATGAAGATCTTGCTTCACAAATGTTAAAACACCAGGAACGAGCAATTGACTTTTGGCAAAAGCATTGG
          acttgat  putative branch site (score: 5)
                                          cctgcctttct  putative PPT
                                aattcatat  TA-rich tract