1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtatacttcttcattatgttactagcttaccttccttgaactcctctaactagcttgatgggtaatatccagGACAAACCAATTCCTCTAAAGCTGAAACGCCTTGCACGTGACCATGAGAGATTTCTCTGGGCACTGAGTATAGTACAGTCTCGTTCTGTCAACTTGAAGT
species | Zea mays |
transcript | GRMZM5G807767_T01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AAATGTTAAAACACCAGGAACGAGCAATTGACTTTTGGCAAAAGCATTGG GACAAACCAATTCCTCTAAAGCTGAAACGCCTTGCACGTGACCATGAGAGAEST: gi|13557817|gb|BG549173.1|BG549173
genomic: AAATGTTAAAACACCAGGAACGAGCAATTGACTTTTGGCAAAAGCATTGGgtatacttct ... taatatccagGACAAACCAATTCCTCTAAAGCTGAAACGCCTTGCACGTGACCATGAGAGA
EST: AATGTTAAAACATTCATGAACGAGCAATTGACTTTTGGCAAAAGCATTGG GACAAACCAATTCCTCTAAAGCTGAAACGCCTTGCACGTGACCATGAGAGAEST: gi|211112500|gb|FL459337.1|FL459337
genomic: AATGTTAAAACA-CCAGGAACGAGCAATTGACTTTTGGCAAAAGCATTGGgtatacttct ... taatatccagGACAAACCAATTCCTCTAAAGCTGAAACGCCTTGCACGTGACCATGAGAGA
EST: AACACCAGGAACGAGCAATTGACTTTTGGCAAAAGCATTGG GACAAACCAATTCCTCTAAAGYTGAAACGCCTTGCACGTGACCATGAGAGA
genomic: AACACCAGGAACGAGCAATTGACTTTTGGCAAAAGCATTGGgtatacttct ... taatatccagGACAAACCAATTCCTCTAAAGCTGAAACGCCTTGCACGTGACCATGAGAGA
gttactagcttaccttccttgaactcctctaactagcttgatgggtaatatccagGACAAACCAATTCCTCTAAAGCTGAAACGCCTTGCACGTGACCATGAGAGATTTCTCTGGGCACTGAGTATAGTACAGTCTCGTTCTGTCAACTTGAAGT
taatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatacttcttcattatgttactagcttaccttccttgaactcctctaactagcttgatgggtaatatccagGACAAACCAATTCCTCTAAAGCTGAAACGCCTTGCACGTGACCATGAGAGATTTCTCTGGGCACTGAGTATAGTACAGTCTCGTTCTGTCAACTTGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG