1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtaagagaagaaggcccccccccccccccccccccccccccttgcgtgctacagatcggtcacgcgcactgcactgcgtttacggtctctctctggaacaccaacagGTGAGGGAGATGACGGTGGACCAGGCCGCCGCCCTGATGGCGCCCCTGGAGCAAGCTTACAGGCGCAACAACAGGCCGACGCAGCCGAGGAACGGCCGCG
species | Zea mays |
transcript | GRMZM5G807267_T01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TCACCACGCCGCCCTGCACCGAGAACGTCATCTGGAGCGTCCTGGCCCAG GTGAGGGAGATGACGGTGGACCAGGCCGCCGCCCTGATGGCGCCCCTGGAGEST: gi|60344770|gb|DN211743.1|DN211743
genomic: TCACCACGCCGCCCTGCACCGAGAACGTCATCTGGAGCGTCCTGGCCCAGgtaagagaag ... acaccaacagGTGAGGGAGATGACGGTGGACCAGGCCGCCGCCCTGATGGCGCCCCTGGAG
EST: TCACCACGCCGCCCTGCACCGAGAACGTCATCTGGAGCGTCCTGGCCCAG GTGAGGGAGATGACGGTGGACCAGGCCGCCGCCCTGATGGCGCCCCTGGAGEST: gi|74244873|gb|DT652787.1|DT652787
genomic: TCACCACGCCGCCCTGCACCGAGAACGTCATCTGGAGCGTCCTGGCCCAGgtaagagaag ... acaccaacagGTGAGGGAGATGACGGTGGACCAGGCCGCCGCCCTGATGGCGCCCCTGGAG
EST: TCACCACGCCGCCCTGCACCGAGAACGTCATCTGGAGCGTCCTGCCCCAG GTGAGGGAGATGACGGTGGACCAGGGCGCCGCCCTGATGGCGCCCCTGGAGEST: gi|76288688|gb|DV028256.1|DV028256
genomic: TCACCACGCCGCCCTGCACCGAGAACGTCATCTGGAGCGTCCTGGCCCAGgtaagagaag ... acaccaacagGTGAGGGAGATGACGGTGGACCAGGCCGCCGCCCTGATGGCGCCCCTGGAG
EST: TCACCACGCCGCCCTGCACCGAGAACGTCATCTGGAGCGTCCTGNCCCAG GTGAGGGAGATGACGGTGGACCAGGCCGTCGCCCTGATGGCGCCCCTGGAGEST: gi|86469687|gb|DY236057.1|DY236057
genomic: TCACCACGCCGCCCTGCACCGAGAACGTCATCTGGAGCGTCCTGGCCCAGgtaagagaag ... acaccaacagGTGAGGGAGATGACGGTGGACCAGGCCGCCGCCCTGATGGCGCCCCTGGAG
EST: TCACCACGCCGCCCTGCACCGAGAACGTCATTTGGAGCGTCCTGGCCCAG GTGAGGGAGATGACGGTGGACCAGGCCGCCGCCCTGATGGCGCCCCTGGAGEST: gi|50324602|gb|CO519728.1|CO519728
genomic: TCACCACGCCGCCCTGCACCGAGAACGTCATCTGGAGCGTCCTGGCCCAGgtaagagaag ... acaccaacagGTGAGGGAGATGACGGTGGACCAGGCCGCCGCCCTGATGGCGCCCCTGGAG
EST: TCACCACGCCGCCCTGCACCGAGAACGTCATCTGGAGCGTCCTGGCCCAG GTGAGGGAGATGACGGTGGACCAGGCCGCCGCCCTGATGGCGCCCCTGGAGEST: gi|86474309|gb|DY240679.1|DY240679
genomic: TCACCACGCCGCCCTGCACCGAGAACGTCATCTGGAGCGTCCTGGCCCAGgtaagagaag ... acaccaacagGTGAGGGAGATGACGGTGGACCAGGCCGCCGCCCTGATGGCGCCCCTGGAG
EST: TCACCACGCCGCCCTGCACCGAGAACGTCATCTGGAGCGTCCTGGCCCAG GTGAGGGAGATGACGGTGGACCAGGCCGCCGCCCTGATGGCGCCCCTGGAGEST: gi|50324601|gb|CO519727.1|CO519727
genomic: TCACCACGCCGCCCTGCACCGAGAACGTCATCTGGAGCGTCCTGGCCCAGgtaagagaag ... acaccaacagGTGAGGGAGATGACGGTGGACCAGGCCGCCGCCCTGATGGCGCCCCTGGAG
EST: TCACCACGCCGCCCTGCACCGAGAACGTCATTTGGAGCGTCCTGGCCCAG GTGAGGGAGATGACGGTGGACCAGGCCGCCGCCCTGATGGCGCCCCTGGAGEST: gi|78112700|gb|DV531094.1|DV531094
genomic: TCACCACGCCGCCCTGCACCGAGAACGTCATCTGGAGCGTCCTGGCCCAGgtaagagaag ... acaccaacagGTGAGGGAGATGACGGTGGACCAGGCCGCCGCCCTGATGGCGCCCCTGGAG
EST: TCACCACGCCGCCCTGCACCGAGAACGTCATCTGGAGCGTCCTGGCCCAG GTGAGGGAGATGACGGTGGACCAGGCCGCCGCCCTGATGGCGCCCCTGGAGEST: gi|211385816|gb|FL436939.1|FL436939
genomic: TCACCACGCCGCCCTGCACCGAGAACGTCATCTGGAGCGTCCTGGCCCAGgtaagagaag ... acaccaacagGTGAGGGAGATGACGGTGGACCAGGCCGCCGCCCTGATGGCGCCCCTGGAG
EST: TCACCAAGCCGCCTTGCACGGAGAATGTCATTTGGAGCGTCCTGGCCCAG GTGAGGGAGATGACGGTGGACCAGGCCGCCGCCCTGATGGCGCCCCTGGAGEST: gi|74239798|gb|DT647712.1|DT647712
genomic: TCACCACGCCGCCCTGCACCGAGAACGTCATCTGGAGCGTCCTGGCCCAGgtaagagaag ... acaccaacagGTGAGGGAGATGACGGTGGACCAGGCCGCCGCCCTGATGGCGCCCCTGGAG
EST: TCACCACGCCGCCCTGCACCGAGAACGTCATCTGGAGCGTCCTGGCCCAG GTGAGGGAGATGACGGTGGACCAGGCCGCCGCCCTGATGGCGCCCCTGGAGEST: gi|60346845|gb|DN213818.1|DN213818
genomic: TCACCACGCCGCCCTGCACCGAGAACGTCATCTGGAGCGTCCTGGCCCAGgtaagagaag ... acaccaacagGTGAGGGAGATGACGGTGGACCAGGCCGCCGCCCTGATGGCGCCCCTGGAG
EST: TCACCACGCCGCCCTGCACCGAGAACGTCATCTGGAGCGTCCTGGCCCAG GTGAGGGAGATGACGGTGGACCAGGCCGCCGCCCTGATGGCGCCCCTGGAGEST: gi|76014111|gb|DT941281.1|DT941281
genomic: TCACCACGCCGCCCTGCACCGAGAACGTCATCTGGAGCGTCCTGGCCCAGgtaagagaag ... acaccaacagGTGAGGGAGATGACGGTGGACCAGGCCGCCGCCCTGATGGCGCCCCTGGAG
EST: TCACCACGCCGCCCTGCACCGAGAACGTCATCTGGAGCGTCCTGTCCCAG GTGAGGGAGATGACGGTGGACCAGGCCGCCGCCCTGATGGCGEST: gi|14244259|gb|BG842238.2|BG842238
genomic: TCACCACGCCGCCCTGCACCGAGAACGTCATCTGGAGCGTCCTGGCCCAGgtaagagaag ... acaccaacagGTGAGGGAGATGACGGTGGACCAGGCCGCCGCCCTGATGGCG
EST: TCACCACGCCGCCGTGCACCAAGAACGTCATCTGGAGCGTCCTGGCCCAG GTGAGGGAGATCACGGTGGACCAGGCCGCCGCCCTGATGGCGCCCCTGGAGEST: gi|71417345|gb|DR804018.1|DR804018
genomic: TCACCACGCCGCCCTGCACCGAGAACGTCATCTGGAGCGTCCTGGCCCAGgtaagagaag ... acaccaacagGTGAGGGAGATGACGGTGGACCAGGCCGCCGCCCTGATGGCGCCCCTGGAG
EST: TCACCACGCCGCCCTGCACCGAGAACGTCATCTGTAGCGTCCTGGCTCAT GTGAGGAAGATGACGGTGGACCAGGCCGCEST: gi|149095902|gb|EE181563.2|EE181563
genomic: TCACCACGCCGCCCTGCACCGAGAACGTCATCTGGAGCGTCCTGGCCCAGgtaagagaag ... acaccaacagGTGAGGGAGATGACGGTGGACCAGGCCGC
EST: TCACCACGCCGCCCTGCACCGAGAACGTCATTTGGAGCGTCCTGGCCCAG GTGAGGGAGATGACGGTGGACCAGGCCGCCGCCCTGATGGCGCCCCTGGAGEST: gi|91050066|gb|EB160484.1|EB160484
genomic: TCACCACGCCGCCCTGCACCGAGAACGTCATCTGGAGCGTCCTGGCCCAGgtaagagaag ... acaccaacagGTGAGGGAGATGACGGTGGACCAGGCCGCCGCCCTGATGGCGCCCCTGGAG
EST: TCACCACGCCGCCCTGCACCGAGAACGTCATCTGGAGCGTCCTGGCCCAG GTGAGGGAGATGACGGTGGACCAGGCCGCCGCCCTGATGGCGCCCCTGGAGEST: gi|211295581|gb|FL447840.1|FL447840
genomic: TCACCACGCCGCCCTGCACCGAGAACGTCATCTGGAGCGTCCTGGCCCAGgtaagagaag ... acaccaacagGTGAGGGAGATGACGGTGGACCAGGCCGCCGCCCTGATGGCGCCCCTGGAG
EST: TCACCACGCCGCCCTGCACCGAGAACGTCATCTGGAGCGTCCTGGCCCAG GTGAGGGAGATGACGGTGGACCAGGCCGCCGCCCTGATGGCGCCCCTGGAGEST: gi|211385817|gb|FL436940.1|FL436940
genomic: TCACCACGCCGCCCTGCACCGAGAACGTCATCTGGAGCGTCCTGGCCCAGgtaagagaag ... acaccaacagGTGAGGGAGATGACGGTGGACCAGGCCGCCGCCCTGATGGCGCCCCTGGAG
EST: TCACCAAGCCGCCTTGCACCGAGAATGTCATTTGGAGCGTCCTGGCCCAG GTGAGGGAGATGACGGTGGACCAGGCCGCTGCCGTGATGGCGCCCCTGGAGEST: gi|89248779|gb|DY620565.1|DY620565
genomic: TCACCACGCCGCCCTGCACCGAGAACGTCATCTGGAGCGTCCTGGCCCAGgtaagagaag ... acaccaacagGTGAGGGAGATGACGGTGGACCAGGCCGCCGCCCTGATGGCGCCCCTGGAG
EST: TCACCACGCCGCCCTGCACCGAGAACGTCATCTGGAGCGTCCTGGCCCAG GTGAGGGAGATGACGGTGGACCAGGCCGCCGCCCTGATGGCGCCCCTGGAGEST: gi|74239799|gb|DT647713.1|DT647713
genomic: TCACCACGCCGCCCTGCACCGAGAACGTCATCTGGAGCGTCCTGGCCCAGgtaagagaag ... acaccaacagGTGAGGGAGATGACGGTGGACCAGGCCGCCGCCCTGATGGCGCCCCTGGAG
EST: TCACCACGCCGCCCTGCACCGAGAACGTCATCTGGAGCGTCCTGGCCCAG GTGAGGGAGATGACGGTGGACCAGGCCGCCGCCCTGATGGCGCCCCTGGAGEST: gi|211385818|gb|FL436941.1|FL436941
genomic: TCACCACGCCGCCCTGCACCGAGAACGTCATCTGGAGCGTCCTGGCCCAGgtaagagaag ... acaccaacagGTGAGGGAGATGACGGTGGACCAGGCCGCCGCCCTGATGGCGCCCCTGGAG
EST: TCACCACGCCGCCTTGCACCGAGAATGTCATCTGGAGCGTCCTGGCCCAG GTGAGGGAGATGACGGTGGACCAGGCCGCCGCCCTGATGGCGCCCCTGGAGEST: gi|71316204|gb|DR794778.1|DR794778
genomic: TCACCACGCCGCCCTGCACCGAGAACGTCATCTGGAGCGTCCTGGCCCAGgtaagagaag ... acaccaacagGTGAGGGAGATGACGGTGGACCAGGCCGCCGCCCTGATGGCGCCCCTGGAG
EST: TCACCACGCCGCCCTGCACCGAGAACGTCATCTGGAGCGTCCTGGCCCAG GTGAGGGAGATGACGGTGGACCAGGCCGTCGCCCTGATGGCGCCCCTGGGA
genomic: TCACCACGCCGCCCTGCACCGAGAACGTCATCTGGAGCGTCCTGGCCCAGgtaagagaag ... acaccaacagGTGAGGGAGATGACGGTGGACCAGGCCGCCGCCCTGATGGCGCCCCTGG-A
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagagaagaaggcccccccccccccccccccccccccccttgcgtgctacagatcggtcacgcgcactgcactgcgtttacggtctctctctggaacaccaacagGTGAGGGAGATGACGGTGGACCAGGCCGCCGCCCTGATGGCGCCCCTGGAGCAAGCTTACAGGCGCAACAACAGGCCGACGCAGCCGAGGAACGGCCGCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT