1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' |
...gctagtaatgtatccatgccttgcattgtttttgtagcatcagtgaagcactctagctcgaaacatttgttcttaaatggttaaatctcacatggtgcagGAAAAGCAACCGTTTGAACGCATTGAGGTCAGCAGGGCAGAAGCTCTTGAAATGTTTGCTGAGAATGAATTCAAG
species | Zea mays |
transcript | GRMZM2G553314_T01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: ATGAGGAGCACTTTGGTATCATTGAAAACCAAGCTAAAAAGGCTGTTGCG GAAAAGCAACCGTTTTGAACGCATTGAGGTTCAGCAGGGCAGAAGCTCTTEST: gi|149089740|gb|EE179011.2|EE179011
genomic: ATGAGGAGCACTTTGGTATCATTGAAAACCAAGCTAAAAAGGCTGTTGCGgtatgctttg ... catggtgcagGAAAAGCAACCGTTT-GAACGCATTGAGGT-CAGCAGGGCAGAAGCTCTT
EST: ATGAGGAGCACTTTGGTATCATTGAAAACCAAGCTAAAAAGGCTGTTGCG GAAAAGCAACCGTTTGAACGCATTGAGGTCAGCAGGGCAGAAGCTCTTGAAEST: gi|22819104|gb|BU499194.1|BU499194
genomic: ATGAGGAGCACTTTGGTATCATTGAAAACCAAGCTAAAAAGGCTGTTGCGgtatgctttg ... catggtgcagGAAAAGCAACCGTTTGAACGCATTGAGGTCAGCAGGGCAGAAGCTCTTGAA
EST: ATGAGGAGCACTTTGGTATCATTGAAAACCAAGCTAAAAAGGCTGTTGCG GAAAAAGCAACCGTTTGAACGCATTGAGGTCAGCAGGGCAGAAGCTCTTGAEST: gi|26457084|gb|CA828667.1|CA828667
genomic: ATGAGGAGCACTTTGGTATCATTGAAAACCAAGCTAAAAAGGCTGTTGCGgtatgctttg ... catggtgcagG-AAAAGCAACCGTTTGAACGCATTGAGGTCAGCAGGGCAGAAGCTCTTGA
EST: ATGAGGAGCACTTTGGTATCATTGAAAACCAAGCTAAAAAGGCTGTTGCG GAAAAGCAACCGTTTGAACGCATTGAGGTCAGCAGGGCAGAAGCTCTTGAAEST: gi|87153201|gb|DY397990.1|DY397990
genomic: ATGAGGAGCACTTTGGTATCATTGAAAACCAAGCTAAAAAGGCTGTTGCGgtatgctttg ... catggtgcagGAAAAGCAACCGTTTGAACGCATTGAGGTCAGCAGGGCAGAAGCTCTTGAA
EST: ATGAGGAGCACTTTGGTATCATTGAAAACCAAGCTAAAAAGGCTGTTGCG GAAAAGCAACCGTTTGAACGCATTGAGGTCAGCAGGGCAGAAGCTCTTGAAEST: gi|20507213|gb|BQ279533.1|BQ279533
genomic: ATGAGGAGCACTTTGGTATCATTGAAAACCAAGCTAAAAAGGCTGTTGCGgtatgctttg ... catggtgcagGAAAAGCAACCGTTTGAACGCATTGAGGTCAGCAGGGCAGAAGCTCTTGAA
EST: TGAGGAGTCACTTTGGTATCATTGAAAACCAAGCTAAAAAGGCTGTTGCG GAAAAGCAACCGTTTGAACGCATTGAGGTCAGCAGGGCAGAAGCTCTTGAAEST: gi|211033167|gb|FL324568.1|FL324568
genomic: TGAGGAG-CACTTTGGTATCATTGAAAACCAAGCTAAAAAGGCTGTTGCGgtatgctttg ... catggtgcagGAAAAGCAACCGTTTGAACGCATTGAGGTCAGCAGGGCAGAAGCTCTTGAA
EST: ATGAGGAGCACTTTGGTATCATTGAAAACCAAGCTAAAAAGGCTGTTGCG GAAAAGCAACCGTTTGAACGCATTGAGGTCAGCAGGGCAGAAGCTCTTGAAEST: gi|26559163|gb|CA831398.1|CA831398
genomic: ATGAGGAGCACTTTGGTATCATTGAAAACCAAGCTAAAAAGGCTGTTGCGgtatgctttg ... catggtgcagGAAAAGCAACCGTTTGAACGCATTGAGGTCAGCAGGGCAGAAGCTCTTGAA
EST: ATGAGGAGCACTTTGGTATCATTGAAAACCAAGCTAAAAAGGCTGTTGCG GAAAAGCAACCGTTTGAACGCATTGAGGTCAGCAGGGCAGAAGCTCTTGAAEST: gi|87157710|gb|DY402499.1|DY402499
genomic: ATGAGGAGCACTTTGGTATCATTGAAAACCAAGCTAAAAAGGCTGTTGCGgtatgctttg ... catggtgcagGAAAAGCAACCGTTTGAACGCATTGAGGTCAGCAGGGCAGAAGCTCTTGAA
EST: ATGAGGAGCACTTTGGTATCATTGAAAACCAAGCTAAAAAGGCTGTTGCG GAAAAGCAACCGTTTGAACGCATTGAGGTCAGCAGGGCAGAAGCTCTTGAAEST: gi|22542059|gb|BU092497.1|BU092497
genomic: ATGAGGAGCACTTTGGTATCATTGAAAACCAAGCTAAAAAGGCTGTTGCGgtatgctttg ... catggtgcagGAAAAGCAACCGTTTGAACGCATTGAGGTCAGCAGGGCAGAAGCTCTTGAA
EST: ATGAGGAGCACTTTGGTATCATTGAAAACCAAGCTAAAAAGGCTGTTGCG GAAAAGCAACCGTTTGAACGCATTGAGGTCAGCAGGGCAGAAGCTCTTGAAEST: gi|32933378|gb|CF038190.1|CF038190
genomic: ATGAGGAGCACTTTGGTATCATTGAAAACCAAGCTAAAAAGGCTGTTGCGgtatgctttg ... catggtgcagGAAAAGCAACCGTTTGAACGCATTGAGGTCAGCAGGGCAGAAGCTCTTGAA
EST: ATGAGGAGCACTTTGGTATCATTGAAAACCAAGCTAAAAAGGCTGTTGCG GAAAAGCAACCGTTTGAACGCATTGAGGTCAGCAGGGCAGAAGCTCTTGAAEST: gi|50334514|gb|CO529640.1|CO529640
genomic: ATGAGGAGCACTTTGGTATCATTGAAAACCAAGCTAAAAAGGCTGTTGCGgtatgctttg ... catggtgcagGAAAAGCAACCGTTTGAACGCATTGAGGTCAGCAGGGCAGAAGCTCTTGAA
EST: ATGAGGAGCACTTTGGTATCATTGAAAACCAAGCTAAAAAGGCTGTTGCG GAAAAGCAACCGTTTGAACGCATTGAGGTCAGCAGGGCAGAAGCTCTTGAAEST: gi|19058529|gb|BM737196.1|BM737196
genomic: ATGAGGAGCACTTTGGTATCATTGAAAACCAAGCTAAAAAGGCTGTTGCGgtatgctttg ... catggtgcagGAAAAGCAACCGTTTGAACGCATTGAGGTCAGCAGGGCAGAAGCTCTTGAA
EST: ATGAGGAGCACTTTGGTATCATTGAAAACCAAGCTAAAAAGGCTGTTGCG GAAAAGCAACCGTTTGAACGCATTGAGGTCAGCAGGGCAGAAGCTCTTGAAEST: gi|78092217|gb|DV520591.1|DV520591
genomic: ATGAGGAGCACTTTGGTATCATTGAAAACCAAGCTAAAAAGGCTGTTGCGgtatgctttg ... catggtgcagGAAAAGCAACCGTTTGAACGCATTGAGGTCAGCAGGGCAGAAGCTCTTGAA
EST: ATGAGGAGCACTTTGGTATCATTGAAAACCAAGCTAAAAAGGCTGTTGCG GAAAAGCAACCGTTTGAACGCATTGAGGTCAGCAGGGCAGAAGCTCTTGAAEST: gi|22490568|gb|BU050491.1|BU050491
genomic: ATGAGGAGCACTTTGGTATCATTGAAAACCAAGCTAAAAAGGCTGTTGCGgtatgctttg ... catggtgcagGAAAAGCAACCGTTTGAACGCATTGAGGTCAGCAGGGCAGAAGCTCTTGAA
EST: CTAAAAAGGCTGTTGCG GAAAAGCAACCGTTTGAACGCATTGAGGTCAGCAGGGCAGAAGCTCTTGAA
genomic: CTAAAAAGGCTGTTGCGgtatgctttg ... catggtgcagGAAAAGCAACCGTTTGAACGCATTGAGGTCAGCAGGGCAGAAGCTCTTGAA
aagcactctagctcgaaacatttgttcttaaatggttaaatctcacatggtgcagGAAAAGCAACCGTTTGAACGCATTGAGGTCAGCAGGGCAGAAGCTCTTGAAATGTTTGCTGAGAATGAATTCAAG
atctcac putative branch site (score: 173)
atttgttcttaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gctagtaatgtatccatgccttgcattgtttttgtagcatcagtgaagcactctagctcgaaacatttgttcttaaatggttaaatctcacatggtgcagGAAAAGCAACCGTTTGAACGCATTGAGGTCAGCAGGGCAGAAGCTCTTGAAATGTTTGCTGAGAATGAATTCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - tccatgc
- - - - - - - - - - ttgcatt
- - - - - - - - - - - - - -gtttttg
- - - - - - - - - - - - - - - - - - gcatcag
- - - - - - - - - - - - - - - - - - - - - -tgaagca