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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tatccacggcgagctctttatcaatattccactccttcaggtccctcttcactgcctctgtagttacatcaatttgttgatgacatgtcattgttttcagTGGATGCTTCAAACTCCTGGTGCAACAAGTTACATGGGATGCATTGGAAAGGACAAGTTTGGTGAGGAAATGAAGAAAAACGCTCAAGCTGCAGGAGTTA

Basic information

species Zea mays
transcript GRMZM2G540538_T02
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G540538_T02 (Zea mays), 3'ss of exon 4
lower sequence: LOC_Os02g41590.1 (Oryza sativa), 3'ss of exon 4
tatccacggcgagctctttatcaatattccactccttcaggtccctcttcactgcctctgtagttacatcaatttgttgatgacatgtcattgtttt-cagTGGATGCTTCAAACTCCTGGTGCAACAAGTTACATGGGATGCATTGGAAAGGACAAGTTTGGTGAGGAAATGAAGAAAAACGCTCAAGCTGCAGGAGTTA
        |  ||||||  ||| |      |  || | ||      |  ||    | |||||  || |    |||| | |    ||| ||||| ||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| |||||||| || || |||||||| || ||||
--------gtaagctctgaatccac---taaaaccatgagcaagagcaacaaaaac-ctgtatatatacttgtttgcttactgtatgccattgctttgcagTGGATGCTTCAAACTCCTGGTGCAACAAGTTACATGGGTTGCATTGGAAAGGATAAGTTTGGTGAGGAGATGAAGAAGAATGCCCAAGCTGCTGGTGTTA

upper sequence: GRMZM2G540538_T02 (Zea mays), 3'ss of exon 4
lower sequence: GLYMA19G36630.1 (Glycine max), 3'ss of exon 4
tatccacggcgagctctttatcaatattccactccttcaggtccctcttcactgcctctgtagttacatcaatttgttgatgacatgtcattgttttcagTGGATGCTTCAAACTCCTGGTGCAACAAGTTACATGGGATGCATTGGAAAGGACAAGTTTGGTGAGGAAATGAAGAAAAACGCTCAAGCTGCAGGAGTTA
  |      | | ||  |||    |     |  |  | |      |||  | |  || ||  || | | ||||||     | || | |   |  ||  |||||||||| |||  ||||||||||||||||||||||||  |||| |||||||| |||||||| || || |||||||| ||| |  |   ||| || || |
-gtatgtatctaccttgttagtgcttagtaatactctgaa-----tctatattagctttg--gtcaaagcaatttaccctttac-ttttgcttcttgtagTGGATGCTCCAAGTTCCTGGTGCAACAAGTTACATGGGTGGCATAGGAAAGGATAAGTTTGGGGAAGAGATGAAGAAGAACTCAAAGCTTGCTGGTGTAA

upper sequence: GRMZM2G540538_T02 (Zea mays), 3'ss of exon 4
lower sequence: GLYMA03G33910.3 (Glycine max), 3'ss of exon 1
tatccacggcgagctctttatcaatattccactccttcaggtccctc--ttcactgcctctgtagttacatcaatttgttgatgacatgtcattgttttcagTGGATGCTTCAAACTCCTGGTGCAACAAGTTACATGGGATGCATTGGAAAGGACAAGTTTGGTGAGGAAATGAAGAAAAACGCTCAAGCTGCAGGAGTTA
 |  || ||         |||  || | ||        |   | ||   |     |   || | || | | ||||||     | || | |   |  ||  |||||||||| |||  ||||||||||||||||||||||||  |||| |||||||| |||||||| || || |||||||| ||| |      ||| || || |
-aatcaaggttgctcaagtatgcatctaccttgttagtaatactctgaatctgtagtagctttggtcaaagcaatttaccctttac-ttttgcttcttgtagTGGATGCTCCAAGTTCCTGGTGCAACAAGTTACATGGGTGGCATAGGAAAGGATAAGTTTGGGGAAGAGATGAAGAAGAACTCAAGGCTTGCTGGTGTAA

upper sequence: GRMZM2G540538_T02 (Zea mays), 3'ss of exon 4
lower sequence: GLYMA03G33910.2 (Glycine max), 3'ss of exon 3
tatccacggcgagctctttatcaatattccactccttcaggtccctcttcactgcctctgtagttacatcaatttgttgatgacatgtcattgttttcagTGGATGCTTCAAACTCCTGGTGCAACAAGTTACATGGGATGCATTGGAAAGGACAAGTTTGGTGAGGAAATGAAGAAAAACGCTCAAGCTGCAGGAGTTA
  |   |  | | ||  |||  |||| ||     ||  ||            |  || ||  || | | ||||||     | || | |   |  ||  |||||||||| |||  ||||||||||||||||||||||||  |||| |||||||| |||||||| || || |||||||| ||| |      ||| || || |
-gtatgcatctaccttgttagtaatactctgaatctgtag------------tagctttg--gtcaaagcaatttaccctttac-ttttgcttcttgtagTGGATGCTCCAAGTTCCTGGTGCAACAAGTTACATGGGTGGCATAGGAAAGGATAAGTTTGGGGAAGAGATGAAGAAGAACTCAAGGCTTGCTGGTGTAA

upper sequence: GRMZM2G540538_T02 (Zea mays), 3'ss of exon 4
lower sequence: GLYMA10G06580.1 (Glycine max), 3'ss of exon 4
tatccacggcgagctctttatcaatattccactccttcaggtccctcttcactgcctctgtagttacatcaatttgttgatgacatgtcattgttttcagTGGATGCTTCAAACTCCTGGTGCAACAAGTTACATGGGATGCATTGGAAAGGACAAGTTTGGTGAGGAAATGAAGAAAAACGCTCAAGCTGCAGGAGTTA
        |   || |||| |   |  |   ||   || ||      |    | | | ||||| || |||| |||||      ||  ||| |  |  ||||||||||||||| | || ||||| |||||||| || || ||||| ||||||||||| ||||| ||||| |||||||| ||   |  |   |  || || |
--------gtatgcactttctt--ttataagctgagtctggagtagttgtgttacttgtgtagcta-atca-tttgtc---ttcacttcactcataacagTGGATGCTTCAAGCACCAGGTGCCACAAGTTATATAGGTTGCATAGGAAAGGACAAATTTGGAGAGGAGATGAAGAAGAAATGTACACTAGATGGTGTAA

upper sequence: GRMZM2G540538_T02 (Zea mays), 3'ss of exon 4
lower sequence: GLYMA13G20780.1 (Glycine max), 3'ss of exon 4
-tatccacggcgagctctttatcaatattccactccttcaggtccctcttcactgcctctgtagttacatcaatttgttgatgacatgtcattgttttcagTGGATGCTTCAAACTCCTGGTGCAACAAGTTACATGGGATGCATTGGAAAGGACAAGTTTGGTGAGGAAATGAAGAAAAACGCTCAAGCTGCAGGAGTTA
 ||| |||         |||||   |  |   ||   || ||      |    | | | ||||||||     |||  |||    ||  ||||  |    |||||||||||||| | || ||||| ||||||||||| || ||||| ||||||||||| ||||| ||||| |||||||| ||   |  |  ||  || || |
gtatgcact----ttcttttatatgttgtaagctgagtctggagtagttgtgttacttgtgtagtta-----attatttgccttcacttcataat----agTGGATGCTTCAAGCACCAGGTGCCACAAGTTACATAGGTTGCATAGGAAAGGACAAATTTGGAGAGGAGATGAAGAAGAAATGTACACTTGATGGTGTAA

upper sequence: GRMZM2G540538_T02 (Zea mays), 3'ss of exon 4
lower sequence: Vv13s0019g04470.t01 (Vitis vinifera), 3'ss of exon 4
tatccacggcgagctctttatcaatattccactccttcaggtccctcttcactgcctctgtagttacatcaatttgttga---tgacatgtcattgtttt-cagTGGATGCTTCAAACTCCTGGTGCAACAAGTTACATGGGATGCATTGGAAAGGACAAGTTTGGTGAGGAAATGAAGAAAAACGCTCAAGCTGCAGGAGTTA
     ||    |  | ||||  | |   |    | ||| | |   | |||  |   |  | | || |||  ||||  | |   || | |||   |||||| ||||||||||||||||  ||||| |||||||| || ||||||||||||||||||||||||||||| |||||||||||||||||| |  ||  ||| || ||||
---gtaca-taaaatatttactattgagcttagctttccgctgtattttc--taattaagaaattgcattcattttctcaccttgccttgtgtgtgttttgcagTGGATGCTTCAAATCCCTGGAGCAACAAGCTATATGGGATGCATTGGAAAGGACAAGTTTGGGGAGGAAATGAAGAAAAACTCAAAACTTGCTGGTGTTA

upper sequence: GRMZM2G540538_T02 (Zea mays), 3'ss of exon 4
lower sequence: Vv13s0019g04480.t01 (Vitis vinifera), 3'ss of exon 4
tatccacggcgagctctttatcaatattccactccttcaggtccctcttcactgcctctgtagttacatcaatttgttga---tgacatgtcattgtttt-cagTGGATGCTTCAAACTCCTGGTGCAACAAGTTACATGGGATGCATTGGAAAGGACAAGTTTGGTGAGGAAATGAAGAAAAACGCTCAAGCTGCAGGAGTTA
     ||    |  | ||||  | |   |    | ||||  ||  | ||  ||   |  | | || |||  ||||  | |   || | |||   |||||| ||||||||||||||||  ||||| |||||||| || ||||||||||||||||||||||||||||| |||||||||||||||||| |  ||  ||| || ||||
---gtaca-taaaatatttactattgagcttagctttca--tctgtattttctaattaagaaatttcattcattttctcaccttgccttgtgtgtgttttgcagTGGATGCTTCAAATCCCTGGAGCAACAAGCTATATGGGATGCATTGGAAAGGACAAGTTTGGGGAGGAAATGAAGAAAAACTCAAAACTTGCTGGTGTTA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18654569|gb|BM499374.1|BM499374
EST:     GAGCCACCCAGAACTCTATCAGGGTTGCCCAA                         TGGATGCTTCAAACTCCTGGTGCAACAAGTTACATGGGATGCATTGGAAAG
genomic: GAGCCACCCAGAACTCTATCAGGGTTGCCCAAgtaagctctc ... ttgttttcagTGGATGCTTCAAACTCCTGGTGCAACAAGTTACATGGGATGCATTGGAAAG
EST: gi|9952767|gb|BE639350.1|BE639350
EST:     GAGCCACCCAGAACTCTATCAGGGTTGCCCAA                         TGGATGCTTCAAACTCCTGGTGCAACAAGTTACATGGGATGCATTGGAAAG
genomic: GAGCCACCCAGAACTCTATCAGGGTTGCCCAAgtaagctctc ... ttgttttcagTGGATGCTTCAAACTCCTGGTGCAACAAGTTACATGGGATGCATTGGAAAG
EST: gi|211299293|gb|FK964182.1|FK964182
EST:     GAGCCACCCAGAACTCTATCAGGGTTGCCCAA                         TGGATGCTTCAAACTCCTGGTGCAACAAGTTACATGGGATGCATTGGAAAG
genomic: GAGCCACCCAGAACTCTATCAGGGTTGCCCAAgtaagctctc ... ttgttttcagTGGATGCTTCAAACTCCTGGTGCAACAAGTTACATGGGATGCATTGGAAAG
EST: gi|28361646|gb|CB240002.1|CB240002
EST:     GAGCCACCCAGAACTCTATCAGGGTTGCCCAA                         TGGATGCTTCAAACTCCTGGTGCAACAAGTTACATGGGATGCATTGGAAAG
genomic: GAGCCACCCAGAACTCTATCAGGGTTGCCCAAgtaagctctc ... ttgttttcagTGGATGCTTCAAACTCCTGGTGCAACAAGTTACATGGGATGCATTGGAAAG
EST: gi|211406117|gb|FK964261.1|FK964261
EST:     GAGCCACCCAGAACTCTATCAGGGTTGCCCAA                         TGGATGCTTCAAACTCCTGGTGCAACAAGTTACATGGGATGCATTGGAAAG
genomic: GAGCCACCCAGAACTCTATCAGGGTTGCCCAAgtaagctctc ... ttgttttcagTGGATGCTTCAAACTCCTGGTGCAACAAGTTACATGGGATGCATTGGAAAG
EST: gi|211538004|gb|FL000878.1|FL000878
EST:     GAGCCACCCAGAACTCTATCAGGGTTGCCCAA                         TGGATGCTTCAAACTCCTGGTGCAACAAGTTACATGGGATGCATTGGAAAG
genomic: GAGCCACCCAGAACTCTATCAGGGTTGCCCAAgtaagctctc ... ttgttttcagTGGATGCTTCAAACTCCTGGTGCAACAAGTTACATGGGATGCATTGGAAAG
EST: gi|211534999|gb|FL000868.1|FL000868
EST:     -AGCCACCCAGAACTCTATCAGGGTTGCCCAA                         TGGATGCTTCAAACTCCTGGTGCAACAAGTTACATGGGATGCATTGGAAAG
genomic: GAGCCACCCAGAACTCTATCAGGGTTGCCCAAgtaagctctc ... ttgttttcagTGGATGCTTCAAACTCCTGGTGCAACAAGTTACATGGGATGCATTGGAAAG
EST: gi|19272533|gb|BM888789.1|BM888789
EST:     GAGCCACCCAGAACTCTATCAGGGTTGCCCAA                         TGGATGCTTCAAACTCCTGGTGCAACAAGTTACATGGGATGGATTGGAAAG
genomic: GAGCCACCCAGAACTCTATCAGGGTTGCCCAAgtaagctctc ... ttgttttcagTGGATGCTTCAAACTCCTGGTGCAACAAGTTACATGGGATGCATTGGAAAG
EST: gi|60358287|gb|DN225260.1|DN225260
EST:     GAGCCACCCAGAACTCTATCAGGGTTGCCCAA                         TGGATGCTTCAAACTCCTGGTGCAACAAGTTACATGGGATGCATTGGAAAG
genomic: GAGCCACCCAGAACTCTATCAGGGTTGCCCAAgtaagctctc ... ttgttttcagTGGATGCTTCAAACTCCTGGTGCAACAAGTTACATGGGATGCATTGGAAAG
EST: gi|211295007|gb|FK964152.1|FK964152
EST:     GAGCCACCCAGAACTCTATCAGGGTTGCCCAA                         TGGATGCTTCAAACTCCTGGTGCAACAAGTTACATGGGATGCATTGGAAAG
genomic: GAGCCACCCAGAACTCTATCAGGGTTGCCCAAgtaagctctc ... ttgttttcagTGGATGCTTCAAACTCCTGGTGCAACAAGTTACATGGGATGCATTGGAAAG
EST: gi|28931167|gb|CB334528.1|CB334528
EST:     GAGCCACCCAGAACTCTATCAGGGTTGCCCAA                         TGGATGCTTCAAACTCCTGGTGCAACAAGTTACATGGGATGCATTGGAAAG
genomic: GAGCCACCCAGAACTCTATCAGGGTTGCCCAAgtaagctctc ... ttgttttcagTGGATGCTTCAAACTCCTGGTGCAACAAGTTACATGGGATGCATTGGAAAG
EST: gi|211297153|gb|FK964172.1|FK964172
EST:     GAGCCACCCAGAACTCTATCAGGGTTGCCCAA                         TGGATGCTTCAAACTCCTGGTGCAACAAGTTACATGGGATGCATTGGAAAG
genomic: GAGCCACCCAGAACTCTATCAGGGTTGCCCAAgtaagctctc ... ttgttttcagTGGATGCTTCAAACTCCTGGTGCAACAAGTTACATGGGATGCATTGGAAAG
EST: gi|211299292|gb|FK964181.1|FK964181
EST:     GAGCCACCCAGAACTCTATCAGGGTTGCCCAA                         TGGATGCTTCAAACTCCTGGTGCAACAAGTTACATGGGATGCATTGGAAAG
genomic: GAGCCACCCAGAACTCTATCAGGGTTGCCCAAgtaagctctc ... ttgttttcagTGGATGCTTCAAACTCCTGGTGCAACAAGTTACATGGGATGCATTGGAAAG
EST: gi|211297154|gb|FK964173.1|FK964173
EST:     GAGCCACCCAGAACTCTATCAGGGTTGCCCAA                         TGGATGCTTCAAACTCCTGGTGCAACAAGTTACATGGGATGCATTGGAAAG
genomic: GAGCCACCCAGAACTCTATCAGGGTTGCCCAAgtaagctctc ... ttgttttcagTGGATGCTTCAAACTCCTGGTGCAACAAGTTACATGGGATGCATTGGAAAG
EST: gi|211301432|gb|FK964199.1|FK964199
EST:     GAGCCACCCAGAACTCTATCAGGGTTGCCCAA                         TGGATGCTTCAAACTCCTGGTGCAACAAGTTACATGGGATGCATTGGAAAG
genomic: GAGCCACCCAGAACTCTATCAGGGTTGCCCAAgtaagctctc ... ttgttttcagTGGATGCTTCAAACTCCTGGTGCAACAAGTTACATGGGATGCATTGGAAAG
EST: gi|18654717|gb|BM499522.1|BM499522
EST:     GAGCCACCCAGAACTCTATCAGGGTTGCCCAA                         TGGATGCTTCAAACTCCTGGTGCAACAAGTTACATGGGATGCATTGGAAAG
genomic: GAGCCACCCAGAACTCTATCAGGGTTGCCCAAgtaagctctc ... ttgttttcagTGGATGCTTCAAACTCCTGGTGCAACAAGTTACATGGGATGCATTGGAAAG
EST: gi|211538003|gb|FL000877.1|FL000877
EST:     GAGCCACCCAGAACTCTATCAGGGTTGCCCAA                         TGGATGCTTCAAACTCCTGGTGCAACAAGTTACATGGGATGCATTGGAAAG
genomic: GAGCCACCCAGAACTCTATCAGGGTTGCCCAAgtaagctctc ... ttgttttcagTGGATGCTTCAAACTCCTGGTGCAACAAGTTACATGGGATGCATTGGAAAG
EST: gi|60355538|gb|DN222511.1|DN222511
EST:     GAGCCACCCAGAACTCTATCAGGGTTGCCCAA                         TGGATGCTTCAAACTCCTGGTGCAACAAGTTACATGGGATGCATTGGAAAG
genomic: GAGCCACCCAGAACTCTATCAGGGTTGCCCAAgtaagctctc ... ttgttttcagTGGATGCTTCAAACTCCTGGTGCAACAAGTTACATGGGATGCATTGGAAAG
EST: gi|211292867|gb|FK964139.1|FK964139
EST:     GAGCCACCCAGAACTCTATCAGGGTTGCCCAA                         TGGATGCTTCAAACTCCTGGTGCAACAAGTTACATGGGATGCATTGGAAAG
genomic: GAGCCACCCAGAACTCTATCAGGGTTGCCCAAgtaagctctc ... ttgttttcagTGGATGCTTCAAACTCCTGGTGCAACAAGTTACATGGGATGCATTGGAAAG
EST: gi|18649011|gb|BM497830.1|BM497830
EST:     GAGCCACCCAGAACTCTATCAGGGTTGCCCAA                         TGGATGCTTCAAACTCCTGGTGCAACAAGTTACATGGGATGCATTGGAAAG
genomic: GAGCCACCCAGAACTCTATCAGGGTTGCCCAAgtaagctctc ... ttgttttcagTGGATGCTTCAAACTCCTGGTGCAACAAGTTACATGGGATGCATTGGAAAG
EST: gi|30031919|gb|CB833770.1|CB833770
EST:     GAGCCACCCAGAACTCTATCAGGGTTGCCCAA                         TGGATGCTTCAAACTCCTGGTGCAACAAGTTACATGGGATGCATTGGAAAG
genomic: GAGCCACCCAGAACTCTATCAGGGTTGCCCAAgtaagctctc ... ttgttttcagTGGATGCTTCAAACTCCTGGTGCAACAAGTTACATGGGATGCATTGGAAAG
EST: gi|211406124|gb|FK964268.1|FK964268
EST:     -AGCCACCCAGAACTCTATCAGGGTTGCCCAA                         TGGATGCTTCAAACTCCTGGTGCAACAAGTTACATGGGATGCATTGGAAAG
genomic: GAGCCACCCAGAACTCTATCAGGGTTGCCCAAgtaagctctc ... ttgttttcagTGGATGCTTCAAACTCCTGGTGCAACAAGTTACATGGGATGCATTGGAAAG
EST: gi|211295014|gb|FK964159.1|FK964159
EST:     GAGCCACCCAGAACTCTATCAGGGTTGCCCAA                         TGGATGCTTCAAACTCCTGGTGCAACAAGTTACATGGGATGCATTGGAAAG
genomic: GAGCCACCCAGAACTCTATCAGGGTTGCCCAAgtaagctctc ... ttgttttcagTGGATGCTTCAAACTCCTGGTGCAACAAGTTACATGGGATGCATTGGAAAG
EST: gi|211403574|gb|FK964250.1|FK964250
EST:     -AGCCACCCAGAACTCTATCAGGGTTGCCCAA                         TGGATGCTTCAAACTCCTGGTGCAACAAGTTACATGGGATGCATTGGAAAG
genomic: GAGCCACCCAGAACTCTATCAGGGTTGCCCAAgtaagctctc ... ttgttttcagTGGATGCTTCAAACTCCTGGTGCAACAAGTTACATGGGATGCATTGGAAAG
EST: gi|211403570|gb|FK964246.1|FK964246
EST:     GAGCCACCCAGAACTCTATCAGGGTTGCCCAA                         TGGATGCTTCAAACTCCTGGTGCAACAAGTTACATGGGATGCATTGGAAAG
genomic: GAGCCACCCAGAACTCTATCAGGGTTGCCCAAgtaagctctc ... ttgttttcagTGGATGCTTCAAACTCCTGGTGCAACAAGTTACATGGGATGCATTGGAAAG
EST: gi|30087102|gb|CB885310.1|CB885310
EST:     GAGCCACCCAGAACTCTATCAGGGTTGCCCAA                         TGGATGCTTCAAACTCCTGGTGCAACAAGTTACATGGGATGCATTGGAAAG
genomic: GAGCCACCCAGAACTCTATCAGGGTTGCCCAAgtaagctctc ... ttgttttcagTGGATGCTTCAAACTCCTGGTGCAACAAGTTACATGGGATGCATTGGAAAG
EST: gi|5555550|gb|AI881501.1|AI881501
EST:     GAGCCACCCAGAACTCTATCAGGGTTGCCCAA                         TGGATGCTTCAAACTCCTGGTGCAACAAGTTACATGGGATGCATTGGAAAG
genomic: GAGCCACCCAGAACTCTATCAGGGTTGCCCAAgtaagctctc ... ttgttttcagTGGATGCTTCAAACTCCTGGTGCAACAAGTTACATGGGATGCATTGGAAAG
EST: gi|211303575|gb|FK964215.1|FK964215
EST:     -AGCCACCCAGAACTCTATCAGGGTTGCCCAA                         TGGATGCTTCAAACTCCTGGTGCAACAAGTTACATGGGATGCATTGGAAAG
genomic: GAGCCACCCAGAACTCTATCAGGGTTGCCCAAgtaagctctc ... ttgttttcagTGGATGCTTCAAACTCCTGGTGCAACAAGTTACATGGGATGCATTGGAAAG
EST: gi|19351360|gb|BM895892.1|BM895892
EST:     GAGCCACCCAGAACTCTATCAGGGTTGCCCAA                         TGGATGCTTCAAACTCCTGGTGCAACAAGTTACATGGGATGGATTGGAAAG
genomic: GAGCCACCCAGAACTCTATCAGGGTTGCCCAAgtaagctctc ... ttgttttcagTGGATGCTTCAAACTCCTGGTGCAACAAGTTACATGGGATGCATTGGAAAG
EST: gi|18649868|gb|BM498687.1|BM498687
EST:     GAGCCACCCAGAACTCTATCAGGGTTGCCCAA                         TGGATGCTTCAAACTCCTGGTGCAACAAGTTACATGGGATGCATTGGAAAG
genomic: GAGCCACCCAGAACTCTATCAGGGTTGCCCAAgtaagctctc ... ttgttttcagTGGATGCTTCAAACTCCTGGTGCAACAAGTTACATGGGATGCATTGGAAAG
EST: gi|211401016|gb|FK964225.1|FK964225
EST:     GAGCCACCCAGAACTCTATCAGGGTTGCCCAA                         TGGATGCTTCAAACTCCTGGTGCAACAAGTTACATGGGATGCATTGGAAAG
genomic: GAGCCACCCAGAACTCTATCAGGGTTGCCCAAgtaagctctc ... ttgttttcagTGGATGCTTCAAACTCCTGGTGCAACAAGTTACATGGGATGCATTGGAAAG
EST: gi|211535006|gb|FL000875.1|FL000875
EST:     GAGCCACCCAGAACTCTATCAGGGTTGCCCAA                         TGGATGCTTCAAACTCCTGGTGCAACAAGTTACATGGGATGCATTGGAAAG
genomic: GAGCCACCCAGAACTCTATCAGGGTTGCCCAAgtaagctctc ... ttgttttcagTGGATGCTTCAAACTCCTGGTGCAACAAGTTACATGGGATGCATTGGAAAG
EST: gi|211301430|gb|FK964197.1|FK964197
EST:     -AGCCACCCAGAACTCTATCAGGGTTGCCCAA                         TGGATGCTTCAAACTCCTGGTGCAACAAGTTACATGGGATGCATTGGAAAG
genomic: GAGCCACCCAGAACTCTATCAGGGTTGCCCAAgtaagctctc ... ttgttttcagTGGATGCTTCAAACTCCTGGTGCAACAAGTTACATGGGATGCATTGGAAAG
EST: gi|29543823|gb|CB604203.1|CB604203
EST:     GAGCCACCCAGAACTCTATCAGGGTTGCCCAA                         TGGATGCTTCAAACTCCTGGTGCAACAAGTTACATGGGATGCATTGGAAAG
genomic: GAGCCACCCAGAACTCTATCAGGGTTGCCCAAgtaagctctc ... ttgttttcagTGGATGCTTCAAACTCCTGGTGCAACAAGTTACATGGGATGCATTGGAAAG
EST: gi|211411224|gb|FK964285.1|FK964285
EST:     GAGCCACCCAGAACTCTATCAGGGTTGCCCAA                         TGGATGCTTCAAACTCCTGGTGCAACAAGTTACATGGGATGCATTGGAAAG
genomic: GAGCCACCCAGAACTCTATCAGGGTTGCCCAAgtaagctctc ... ttgttttcagTGGATGCTTCAAACTCCTGGTGCAACAAGTTACATGGGATGCATTGGAAAG
EST: gi|18649867|gb|BM498686.1|BM498686
EST:     GAGCCACCCAGAACTCTATCAGGGTTGCCCAA                         TGGATGCTTCAAACTCCTGGTGCAACAAGTTACATGGGATGCATTGGAAAG
genomic: GAGCCACCCAGAACTCTATCAGGGTTGCCCAAgtaagctctc ... ttgttttcagTGGATGCTTCAAACTCCTGGTGCAACAAGTTACATGGGATGCATTGGAAAG
EST: gi|26557766|gb|CA830001.1|CA830001
EST:     GAGCCACCCAGAACTCTATCAGGGTTGCCCAA                         TGGATGCTTCAAACTCCTGGTGCAACAAGCTACATGGGATGCATTGGAAAG
genomic: GAGCCACCCAGAACTCTATCAGGGTTGCCCAAgtaagctctc ... ttgttttcagTGGATGCTTCAAACTCCTGGTGCAACAAGTTACATGGGATGCATTGGAAAG
EST: gi|211403564|gb|FK964240.1|FK964240
EST:     -AGCCACCCAGAACTCTATCAGGGTTGCCCAA                         TGGATGCTTCAAACTCCTGGTGCAACAAGTTACATGGGATGCATTGGAAAG
genomic: GAGCCACCCAGAACTCTATCAGGGTTGCCCAAgtaagctctc ... ttgttttcagTGGATGCTTCAAACTCCTGGTGCAACAAGTTACATGGGATGCATTGGAAAG
EST: gi|211408681|gb|FK964276.1|FK964276
EST:     GAGCCACCCAGAACTCTATCAGGGTTGCCCAA                         TGGATGCTTCAAACTCCTGGTGCAACAAGTTACATGGGATGCATTGGAAAG
genomic: GAGCCACCCAGAACTCTATCAGGGTTGCCCAAgtaagctctc ... ttgttttcagTGGATGCTTCAAACTCCTGGTGCAACAAGTTACATGGGATGCATTGGAAAG
EST: gi|211408686|gb|FK964281.1|FK964281
EST:     -AGCCACCCAGAACTCTATCAGGGTTGCCCAA                         TGGATGCTTCAAACTCCTGGTGCAACAAGTTACATGGGATGCATTGGAAAG
genomic: GAGCCACCCAGAACTCTATCAGGGTTGCCCAAgtaagctctc ... ttgttttcagTGGATGCTTCAAACTCCTGGTGCAACAAGTTACATGGGATGCATTGGAAAG
EST: gi|18384280|gb|BM417479.1|BM417479
EST:     GAGCCACCCAGAACTCTATCAGGGTTGCCCAA                         TGGATGCTTCAAACTCCTGGTGCAACAAGTTACATGGGATGCATTGGAAAG
genomic: GAGCCACCCAGAACTCTATCAGGGTTGCCCAAgtaagctctc ... ttgttttcagTGGATGCTTCAAACTCCTGGTGCAACAAGTTACATGGGATGCATTGGAAAG
EST: gi|20811213|gb|BQ295691.1|BQ295691
EST:     GAGCCACCCAGAACTCTATCAGGGTTGCCCAA                         TGGATGCTTCAAACTCCTGGTGCAACAAGTTACATGGGATGCATTGGAAAG
genomic: GAGCCACCCAGAACTCTATCAGGGTTGCCCAAgtaagctctc ... ttgttttcagTGGATGCTTCAAACTCCTGGTGCAACAAGTTACATGGGATGCATTGGAAAG
EST: gi|211403575|gb|FK964251.1|FK964251
EST:     GAGCCACCCAGAACTCTATCAGGGTTGCCCAA                         TGGATGCTTCAAACTCCTGGTGCAACAAGTTACATGGGATGCATTGGAAAG
genomic: GAGCCACCCAGAACTCTATCAGGGTTGCCCAAgtaagctctc ... ttgttttcagTGGATGCTTCAAACTCCTGGTGCAACAAGTTACATGGGATGCATTGGAAAG
EST: gi|211301429|gb|FK964196.1|FK964196
EST:     -AGCCACCCAGAACTCTATCAGGGTTGCCCAA                         TGGATGCTTCAAACTCCTGGTGCAACAAGTTACATGGGATGCATTGGAAAG
genomic: GAGCCACCCAGAACTCTATCAGGGTTGCCCAAgtaagctctc ... ttgttttcagTGGATGCTTCAAACTCCTGGTGCAACAAGTTACATGGGATGCATTGGAAAG
EST: gi|18654570|gb|BM499375.1|BM499375
EST:     GAGCCACCCAGAACTCTATCAGGGTTGCCCAA                         TGGATGCTTCAAACTCCTGGTGCAACAAGTTACATGGGATGCATTGGAAAG
genomic: GAGCCACCCAGAACTCTATCAGGGTTGCCCAAgtaagctctc ... ttgttttcagTGGATGCTTCAAACTCCTGGTGCAACAAGTTACATGGGATGCATTGGAAAG
EST: gi|13557954|gb|BG549310.1|BG549310
EST:     GAGCCACCCAGAACTCTATCAGGGTTGCCCAA                         TGGATGCTTCAAA
genomic: GAGCCACCCAGAACTCTATCAGGGTTGCCCAAgtaagctctc ... ttgttttcagTGGATGCTTCAAA
EST: gi|18654716|gb|BM499521.1|BM499521
EST:     GAGCCACCCAGAACTCTATCAGGGTTGCCCAA                         TGGATGCTTCAAACTCCTGGTGCAACAAGTTACATGGGATGCATTGGAAAG
genomic: GAGCCACCCAGAACTCTATCAGGGTTGCCCAAgtaagctctc ... ttgttttcagTGGATGCTTCAAACTCCTGGTGCAACAAGTTACATGGGATGCATTGGAAAG
EST: gi|19436637|gb|BM953047.1|BM953047
EST:     GAGCCACCCAGAACTCTATCAGGGTTGCCCAA                         TGGATGCTTCAAACTCCTGGTGCAACAAGTTACATGGGATGCATTGGAAAG
genomic: GAGCCACCCAGAACTCTATCAGGGTTGCCCAAgtaagctctc ... ttgttttcagTGGATGCTTCAAACTCCTGGTGCAACAAGTTACATGGGATGCATTGGAAAG
EST: gi|211295005|gb|FK964150.1|FK964150
EST:     -AGCCACCCAGAACTCTATCAGGGTTGCCCAA                         TGGATGCTTCAAACTCCTGGTGCAACAAGTTACATGGGATGCATTGGAAAG
genomic: GAGCCACCCAGAACTCTATCAGGGTTGCCCAAgtaagctctc ... ttgttttcagTGGATGCTTCAAACTCCTGGTGCAACAAGTTACATGGGATGCATTGGAAAG
EST: gi|211303579|gb|FK964219.1|FK964219
EST:     -AGCCACCCAGAACTCTATCAGGGTTGCCCAA                         TGGATGCTTCAAACTCCTGGTGCAACAAGTTACATGGGATGCATTGGAAAG
genomic: GAGCCACCCAGAACTCTATCAGGGTTGCCCAAgtaagctctc ... ttgttttcagTGGATGCTTCAAACTCCTGGTGCAACAAGTTACATGGGATGCATTGGAAAG
EST: gi|211406116|gb|FK964260.1|FK964260
EST:     GAGCCACCCAGAACTCTATCAGGGTTGCCCAA                         TGGATGCTTCAAACTCCTGGTGCAACAAGTTACATGGGATGCATTGGAAAG
genomic: GAGCCACCCAGAACTCTATCAGGGTTGCCCAAgtaagctctc ... ttgttttcagTGGATGCTTCAAACTCCTGGTGCAACAAGTTACATGGGATGCATTGGAAAG
EST: gi|26456972|gb|CA828555.1|CA828555
EST:     GAGCCACCCAGAACTCTATCAGGGTTGCCCAA                         TGGATGCTTCAAACTCCTGGTGCAACAAGTTACATGGGATGCATTGGAAAG
genomic: GAGCCACCCAGAACTCTATCAGGGTTGCCCAAgtaagctctc ... ttgttttcagTGGATGCTTCAAACTCCTGGTGCAACAAGTTACATGGGATGCATTGGAAAG
EST: gi|211408679|gb|FK964274.1|FK964274
EST:     GAGCCACCCAGAACTCTATCAGGGTTGCCCAA                         TGGATGCTTCAAACTCCTGGTGCAACAAGTTACATGGGATGCATTGGAAAG
genomic: GAGCCACCCAGAACTCTATCAGGGTTGCCCAAgtaagctctc ... ttgttttcagTGGATGCTTCAAACTCCTGGTGCAACAAGTTACATGGGATGCATTGGAAAG
EST: gi|211299298|gb|FK964187.1|FK964187
EST:     GAGCCACCCAGAACTCTATCAGGGTTGCCCAA                         TGGATGCTTCAAACTCCTGGTGCAACAAGTTACATGGGATGCATTGGAAAG
genomic: GAGCCACCCAGAACTCTATCAGGGTTGCCCAAgtaagctctc ... ttgttttcagTGGATGCTTCAAACTCCTGGTGCAACAAGTTACATGGGATGCATTGGAAAG
EST: gi|211301441|gb|FK964208.1|FK964208
EST:     GAGCCACCCAGAACTCTATCAGGGTTGCCCAA                         TGGATGCTTCAAACTCCTGGTGCAACAAGTTACATGGGATGCATTGGAAAG
genomic: GAGCCACCCAGAACTCTATCAGGGTTGCCCAAgtaagctctc ... ttgttttcagTGGATGCTTCAAACTCCTGGTGCAACAAGTTACATGGGATGCATTGGAAAG
EST: gi|24773803|gb|CA409057.1|CA409057
EST:     GAGCCACCCAGAACTCTATCAGGGTTGCCCAA                         TGGATGCTTCAAACTCCTGGTGCAACAAGTTACATGGGATGCATTGGAAAG
genomic: GAGCCACCCAGAACTCTATCAGGGTTGCCCAAgtaagctctc ... ttgttttcagTGGATGCTTCAAACTCCTGGTGCAACAAGTTACATGGGATGCATTGGAAAG
EST: gi|211401021|gb|FK964230.1|FK964230
EST:     -AGCCACCCAGAACTCTATCAGGGTTGCCCAA                         TGGATGCTTCAAACTCCTGGTGCAACAAGTTACATGGGATGCATTGGAAAG
genomic: GAGCCACCCAGAACTCTATCAGGGTTGCCCAAgtaagctctc ... ttgttttcagTGGATGCTTCAAACTCCTGGTGCAACAAGTTACATGGGATGCATTGGAAAG
EST: gi|28361834|gb|CB240190.1|CB240190
EST:     GAGCCACCCAGAACTCTATCAGGGTTGCCCAA                         TGGATGCTTCAAACTCCTGGTGCAACAAGTTACATGGGATGCATTGGAAAG
genomic: GAGCCACCCAGAACTCTATCAGGGTTGCCCAAgtaagctctc ... ttgttttcagTGGATGCTTCAAACTCCTGGTGCAACAAGTTACATGGGATGCATTGGAAAG
EST: gi|8367104|gb|BE050049.1|BE050049
EST:     GAGCCACCCAGAACTCTATCAGGGTTGCCCAA                         TGGATGCTTCAAACTCCTGGTGCAACAAGTTACATGGGATGCATTGGAAAG
genomic: GAGCCACCCAGAACTCTATCAGGGTTGCCCAAgtaagctctc ... ttgttttcagTGGATGCTTCAAACTCCTGGTGCAACAAGTTACATGGGATGCATTGGAAAG
EST: gi|211403569|gb|FK964245.1|FK964245
EST:     GAGCCACCCAGAACTCTATCAGGGTTGCCCAA                         TGGATGCTTCAAACTCCTGGTGCAACAAGTTACATGGGATGSATTGGAAAG
genomic: GAGCCACCCAGAACTCTATCAGGGTTGCCCAAgtaagctctc ... ttgttttcagTGGATGCTTCAAACTCCTGGTGCAACAAGTTACATGGGATGCATTGGAAAG
EST: gi|40335337|gb|CK369407.1|CK369407
EST:     GAGCCACCCAGAACTCTATCAGGGTTGCCCAA                         TGGATGCTTCAAACTCCTGGTGCTACAAGTTACATGGGATGCATTGGAAAG
genomic: GAGCCACCCAGAACTCTATCAGGGTTGCCCAAgtaagctctc ... ttgttttcagTGGATGCTTCAAACTCCTGGTGCAACAAGTTACATGGGATGCATTGGAAAG
EST: gi|211403566|gb|FK964242.1|FK964242
EST:     GAGCCACCCAGAACTCTATCAGGGTTGCCCAA                         TGGATGCTTCAAACTCCTGGTGCAACAAGTTACATGGGATGCATTGGAAAG
genomic: GAGCCACCCAGAACTCTATCAGGGTTGCCCAAgtaagctctc ... ttgttttcagTGGATGCTTCAAACTCCTGGTGCAACAAGTTACATGGGATGCATTGGAAAG
EST: gi|211295016|gb|FK964161.1|FK964161
EST:     GAGCCACCCAGAACTCTATCAGGGTTGCCCAA                         TGGATGCTTCAAACTCCTGGTGCAACAAGTTACATGGGATGCATTGGAAAG
genomic: GAGCCACCCAGAACTCTATCAGGGTTGCCCAAgtaagctctc ... ttgttttcagTGGATGCTTCAAACTCCTGGTGCAACAAGTTACATGGGATGCATTGGAAAG
EST: gi|211295008|gb|FK964153.1|FK964153
EST:     -AGCCACCCAGAACTCTATCAGGGTTGCCCAA                         TGGATGCTTCAAACT
genomic: GAGCCACCCAGAACTCTATCAGGGTTGCCCAAgtaagctctc ... ttgttttcagTGGATGCTTCAAACT
EST: gi|211303574|gb|FK964214.1|FK964214
EST:     -AGCCACCCAGAACTCTATCAGGGTTGCCCAA                         TGGATGCTTCAAACTCCTGGTGCAACAAGTTACATGGGATGCATTGGAAAG
genomic: GAGCCACCCAGAACTCTATCAGGGTTGCCCAAgtaagctctc ... ttgttttcagTGGATGCTTCAAACTCCTGGTGCAACAAGTTACATGGGATGCATTGGAAAG
EST: gi|18384281|gb|BM417480.1|BM417480
EST:     GAGCCACCCAGAACTCTATCAGGGTTGCCCAA                         TGGATGCTTCAAACTCCTGGTGCAACAAGTTACATGGGATGCATTGGAAAG
genomic: GAGCCACCCAGAACTCTATCAGGGTTGCCCAAgtaagctctc ... ttgttttcagTGGATGCTTCAAACTCCTGGTGCAACAAGTTACATGGGATGCATTGGAAAG
EST: gi|211299303|gb|FK964192.1|FK964192
EST:     -AGCCACCCAGAACTCTATCAGGGTTGCCCAA                         TGGATGCTTCAAACTCCTGGTGCA-CAAGTTACATGGGATGCATTGGAAAG
genomic: GAGCCACCCAGAACTCTATCAGGGTTGCCCAAgtaagctctc ... ttgttttcagTGGATGCTTCAAACTCCTGGTGCAACAAGTTACATGGGATGCATTGGAAAG
EST: gi|24961588|gb|CA483591.1|CA483591
EST:     GAGCCACCCAGAACTCTATCAGGGTTGCCCAA                         TGGATGCTTCAAACTCCTGGTGCAACAAGTTACATGGGATGCATTGGAAAG
genomic: GAGCCACCCAGAACTCTATCAGGGTTGCCCAAgtaagctctc ... ttgttttcagTGGATGCTTCAAACTCCTGGTGCAACAAGTTACATGGGATGCATTGGAAAG
EST: gi|211406111|gb|FK964255.1|FK964255
EST:     -AGCCACCCAGAACTCTATCAGGGTTGCCCAA                         TGGATGCTTCAAACTCCTGGTGCAACAAGTTACATGGGATGCATTGGAAAG
genomic: GAGCCACCCAGAACTCTATCAGGGTTGCCCAAgtaagctctc ... ttgttttcagTGGATGCTTCAAACTCCTGGTGCAACAAGTTACATGGGATGCATTGGAAAG
EST: gi|211406113|gb|FK964257.1|FK964257
EST:     GAGCCACCCAGAACTCTATCAGGGTTGCCCAA                         TGGATGCTTCAAACTCCTGGTGCAACAAGTTACATGGGATGCATTGGAAAG
genomic: GAGCCACCCAGAACTCTATCAGGGTTGCCCAAgtaagctctc ... ttgttttcagTGGATGCTTCAAACTCCTGGTGCAACAAGTTACATGGGATGCATTGGAAAG
EST: gi|211406118|gb|FK964262.1|FK964262
EST:     GAGCCACCCAGAACTCTATCAGGGTTGCCCAA                         TGGATGCTTCAAACTCCTGGTGCAACAAGTTACATGGGATGCATTGGAAAG
genomic: GAGCCACCCAGAACTCTATCAGGGTTGCCCAAgtaagctctc ... ttgttttcagTGGATGCTTCAAACTCCTGGTGCAACAAGTTACATGGGATGCATTGGAAAG
EST: gi|13562186|gb|BG550406.1|BG550406
EST:     GAGCCACCCAGAACTCTATCAGGGTTGCCCAA                         TGGATGCTTCAAACTCCTGGTGCAACAAGTTACATGGGATGCATTGGA
genomic: GAGCCACCCAGAACTCTATCAGGGTTGCCCAAgtaagctctc ... ttgttttcagTGGATGCTTCAAACTCCTGGTGCAACAAGTTACATGGGATGCATTGGA
EST: gi|9953243|gb|BE639826.1|BE639826
EST:     GAGCCACCCAGAACTCTATCAGGGTTGCCCAA                         TGGATGCTTCAAACTTCTGGTGCAACAAGTTACATGGGATGCATTGGAAAG
genomic: GAGCCACCCAGAACTCTATCAGGGTTGCCCAAgtaagctctc ... ttgttttcagTGGATGCTTCAAACTCCTGGTGCAACAAGTTACATGGGATGCATTGGAAAG
EST: gi|211535002|gb|FL000871.1|FL000871
EST:     GAGCCACCCAGAACTCTATCAGGGTTGCCCAA                         TGGATGCTTCAAACTCCTGGTGCAACAAGTTACATGGGATGCATTGGAAAG
genomic: GAGCCACCCAGAACTCTATCAGGGTTGCCCAAgtaagctctc ... ttgttttcagTGGATGCTTCAAACTCCTGGTGCAACAAGTTACATGGGATGCATTGGAAAG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 885

GAGCCACCCAGAACTCTATCAGGGTTGCCCAAgtaagctctc ... ttgttttcagTGGATGCTTCAAACTCCTGGTGCAACAAGTTACATGGGATGCATTGGAAAGGACAAGTTTGGTGAGGAAATGAAGAAAAACGCTCAAGCTGCAGGAGTTA


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 1207

GAGCCACCCAGAACTCTATCAGGGTTGCCCAAgtaagctctc ... ttgttttcagTGGATGCTTCAAACTCCTGGTGCAACAAGTTACATGGGATGCATTGGAAAGGACAAGTTTGGTGAGGAAATGAAGAAAAACGCTCAAGCTGCAGGAGTTA


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 1388

GAGCCACCCAGAACTCTATCAGGGTTGCCCAAgtaagctctc ... ttgttttcagTGGATGCTTCAAACTCCTGGTGCAACAAGTTACATGGGATGCATTGGAAAGGACAAGTTTGGTGAGGAAATGAAGAAAAACGCTCAAGCTGCAGGAGTTA


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 1720

GAGCCACCCAGAACTCTATCAGGGTTGCCCAAgtaagctctc ... ttgttttcagTGGATGCTTCAAACTCCTGGTGCAACAAGTTACATGGGATGCATTGGAAAGGACAAGTTTGGTGAGGAAATGAAGAAAAACGCTCAAGCTGCAGGAGTTA




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcttcactgcctctgtagttacatcaatttgttgatgacatgtcattgttttcagTGGATGCTTCAAACTCCTGGTGCAACAAGTTACATGGGATGCATTGGAAAGGACAAGTTTGGTGAGGAAATGAAGAAAAACGCTCAAGCTGCAGGAGTTA
                             tgttgat  putative branch site (score: 1720)
                                             ttgttttc  putative PPT
                      atcaattt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tatccacggcgagctctttatcaatattccactccttcaggtccctcttcactgcctctgtagttacatcaatttgttgatgacatgtcattgttttcagTGGATGCTTCAAACTCCTGGTGCAACAAGTTACATGGGATGCATTGGAAAGGACAAGTTTGGTGAGGAAATGAAGAAAAACGCTCAAGCTGCAGGAGTTA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- -ccacggc
- - - - - - - - - - - - - - ccactcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgttgat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -catgtca