1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...acttctgttcatgagtacatgttttctacctcttcatgtctgtttctatcatactttgctcttgaaatgtcttattaacttggctatgctcattgttcagCGGATGCAAAAGCTGATAAAGATGACACTAAGAGTCTCA
species | Zea mays |
transcript | GRMZM2G484880_T03 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AACAATGAAGTCTGGACGGTCAACACAGCATAAACCAAAAGTCTCCAATG CGGATGCAAAAGCTGATAAAGATGACACTAAGAGTCTCAEST: gi|211058545|gb|FK994410.1|FK994410
genomic: AACAATGAAGTCTGGACGGTCAACACAGCATAAACCAAAAGTCTCCAATGgttagcttgc ... cattgttcagCGGATGCAAAAGCTGATAAAGATGACACTAAGAGTCTCA
EST: AACAATGAAGTCTGGACGGTCAACACAGCATAAACCAAAAGTCTCCAATG CGGATGCAAAAGCTGATAAAGATGACACTAAGAGTCTCATEST: gi|93284203|gb|EB676467.1|EB676467
genomic: AACAATGAAGTCTGGACGGTCAACACAGCATAAACCAAAAGTCTCCAATGgttagcttgc ... cattgttcagCGGATGCAAAAGCTGATAAAGATGACACTAAGAGTCTCAT
EST: AACAATGAAGTCTGGACGGTCAACACAGCATAAACCCAAAGTCTCCAATG CGGATGCAAAAGCTGATAAAGATGACACTAAAAGTCTCAEST: gi|13178287|gb|BG349545.1|BG349545
genomic: AACAATGAAGTCTGGACGGTCAACACAGCATAAACCAAAAGTCTCCAATGgttagcttgc ... cattgttcagCGGATGCAAAAGCTGATAAAGATGACACTAAGAGTCTCA
EST: AACAATGAAGTCTGGACGGTCAACACAGCATAAACCAAAAGTCTCCAATG CGGATGCAAAAGCTGATAAAGATGACACTAAGAGTCTCAEST: gi|31997934|gb|CD661839.1|CD661839
genomic: AACAATGAAGTCTGGACGGTCAACACAGCATAAACCAAAAGTCTCCAATGgttagcttgc ... cattgttcagCGGATGCAAAAGCTGATAAAGATGACACTAAGAGTCTCA
EST: AACAATGAAGTCTGGACGGTCAACACAGCATAAACCAAAAGTCTCCAATG CGGATGCAAAAGCTGATAAAGATGACACTAAGAGTCTCAEST: gi|166482492|gb|EG041825.1|EG041825
genomic: AACAATGAAGTCTGGACGGTCAACACAGCATAAACCAAAAGTCTCCAATGgttagcttgc ... cattgttcagCGGATGCAAAAGCTGATAAAGATGACACTAAGAGTCTCA
EST: GGTCAACACAGCATAAACCAAAAGTCTCCAATG CGGATGCAAAAGCTGATAAAGATGACACTAAGAGTCTCAEST: gi|211058548|gb|FK994413.1|FK994413
genomic: GGTCAACACAGCATAAACCAAAAGTCTCCAATGgttagcttgc ... cattgttcagCGGATGCAAAAGCTGATAAAGATGACACTAAGAGTCTCA
EST: ACAATGAAGTCTGGACGGGTCA-CACAGCATAAACCCAAAGTCTCCAATG CGGATGCAAAAGCTGA
genomic: ACAATGAAGTCTGGACGG-TCAACACAGCATAAACCAAAAGTCTCCAATGgttagcttgc ... cattgttcagCGGATGCAAAAGCTGA
ctatcatactttgctcttgaaatgtcttattaacttggctatgctcattgttcagCGGATGCAAAAGCTGATAAAGATGACACTAAGAGTCTCA
tattaac putative branch site (score: 1)
aaatgtcttattaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acttctgttcatgagtacatgttttctacctcttcatgtctgtttctatcatactttgctcttgaaatgtcttattaacttggctatgctcattgttcagCGGATGCAAAAGCTGATAAAGATGACACTAAGAGTCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - gttcatg
- - - - - - - gtacatg
- - - - - - - - - - - - - - - -cttcatg
- - - - - - - - - - - - - - - - - - - - tgtttct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gctatgc