Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgtgaaccagcatcttaacttatatgaagctgctaatgtgtgctttcattgttttgctaactgtctctttttttgtaatgttcgcagCTTTTCAGAGGCCTAGCCTATATTCATAATGTACCAGGAGTCTGCCATAGGGATGTAAAGCCACAAAACGTTTTG

Basic information

species Zea mays
transcript GRMZM2G472625_T01
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G472625_T02 (Zea mays), 3'ss of exon 4
lower sequence: LOC_Os01g10840.1 (Oryza sativa), 3'ss of exon 4
gtttgtgaaccagcatcttaacttatatgaagctgctaatgtgtgctttcattgttttgctaactgtctctttttttgtaatgttcgcagCTTTTCAGAGGCCTAGCCTATATTCATAATGTACCAGGAGTCTGCCATAGGGATGTAAAGCCACAAAACGTTTTG
|||||| | ||| ||| |||||   | |     ||| | | ||   | |||||| ||  ||||   |      |||||  ||| | |||||||||||||||  |||| |||||||||| ||| |||||||||||||| |||||||| || |||||||| ||||||
gtttgtcagccaccatgttaacacctctctgattgccactatgc-ttctcattgcttctctaaagatac----ttttgctatgcttgcagCTTTTCAGAGGGTTAGCTTATATTCATACTGTTCCAGGAGTCTGCCACAGGGATGTGAAACCACAAAATGTTTTG

upper sequence: GRMZM2G472625_T02 (Zea mays), 3'ss of exon 4
lower sequence: GLYMA12G33950.1 (Glycine max), 3'ss of exon 4
--------gtttgtgaaccagcatcttaactt-atatgaagctgctaatgtgtgctttcattgtt----ttgctaactgtctctttttttgtaatgttcgcagCTTTTCAGAGGCCTAGCCTATATTCATAATGTACCAGGAGTCTGCCATAGGGATGTAAAGCCACAAAACGTTTTG
         ||| |      |||  ||   || |||||  | |  |  |     ||||   | ||    ||    | ||  |   ||    |    |    || | || || || || || ||||| |||| |||||||||| |||||||||||||| | ||||| |||||  |||||
gtatgaggttttctctgttggcaatttggtttgatatgttgttcttgttcctcactttttcttttgaaattttataatgattgagttgggatgtgatgtctagATCTTTAGGGGACTGGCGTATATCCATACTGTACCAGGAATCTGCCATAGGGATTTGAAGCCTCAAAATCTTTTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33095534|gb|CF055528.1|CF055528
EST:     ACGCGAACCAGAGGATGCCTCTTATCTACGTCAAGCTCTACATGTATCAG                         CTTTTCAGAGGCCTAGCCTATATTCATAATGTGCCAGGAGTCTGCCATAGG
genomic: ACGCGAACCAGAGGATGCCTCTTATCTACGTCAAGCTCTACATGTATCAGgtttgtgaac ... atgttcgcagCTTTTCAGAGGCCTAGCCTATATTCATAATGTACCAGGAGTCTGCCATAGG
EST: gi|6695759|gb|AW288837.1|AW288837
EST:     ACGCGAACCAGAGGATGCCTCTTATCTACGTCAAGCTCTACATGTATCAG                         CTTTTCAGAGGCCTAGCCTATATTCATAATGTACCAGGAGTCTGCCATAGG
genomic: ACGCGAACCAGAGGATGCCTCTTATCTACGTCAAGCTCTACATGTATCAGgtttgtgaac ... atgttcgcagCTTTTCAGAGGCCTAGCCTATATTCATAATGTACCAGGAGTCTGCCATAGG
EST: gi|13198123|gb|BG354164.1|BG354164
EST:     ACGCGAACCAGAGGATGCCTCTTATCTACGTCAAGCTCTACATGTATCAG                         CTTTTCAGAGGCCTAGCCTATATTCATAATGTACCAGGAGTCTGCCATAGG
genomic: ACGCGAACCAGAGGATGCCTCTTATCTACGTCAAGCTCTACATGTATCAGgtttgtgaac ... atgttcgcagCTTTTCAGAGGCCTAGCCTATATTCATAATGTACCAGGAGTCTGCCATAGG
EST: gi|20811237|gb|BQ295715.1|BQ295715
EST:     ACGCGAACCAGAGGATGCCTCTTATCTACGTCAAGCTCTACATGTATCAG                         CTTTTCAGAGGCCTAGCCTATATTCATAATGTACCCGGAGTCTGCCATAGG
genomic: ACGCGAACCAGAGGATGCCTCTTATCTACGTCAAGCTCTACATGTATCAGgtttgtgaac ... atgttcgcagCTTTTCAGAGGCCTAGCCTATATTCATAATGTACCAGGAGTCTGCCATAGG
EST: gi|6696036|gb|AW289144.1|AW289144
EST:     ACGCGAACCAGAGGATGCCTCTTATCTACGTCAAGCTCTACATGTATCAG                         CTTTTCAGAGGCCTAGCCTATATTCATAATGTACCAGGAGTCTGCCATAGG
genomic: ACGCGAACCAGAGGATGCCTCTTATCTACGTCAAGCTCTACATGTATCAGgtttgtgaac ... atgttcgcagCTTTTCAGAGGCCTAGCCTATATTCATAATGTACCAGGAGTCTGCCATAGG
EST: gi|9825069|gb|BE575271.1|BE575271
EST:     ACGCGAACCAGAGGATGCCTCTTATCTACGTCAAGCTCTACATGTATCAG                         CTTTTCAGAGGCCTAGCCTATATTCATAATGTACCAGGAGTCTGCCATAGG
genomic: ACGCGAACCAGAGGATGCCTCTTATCTACGTCAAGCTCTACATGTATCAGgtttgtgaac ... atgttcgcagCTTTTCAGAGGCCTAGCCTATATTCATAATGTACCAGGAGTCTGCCATAGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctaatgtgtgctttcattgttttgctaactgtctctttttttgtaatgttcgcagCTTTTCAGAGGCCTAGCCTATATTCATAATGTACCAGGAGTCTGCCATAGGGATGTAAAGCCACAAAACGTTTTG
                      tgctaac  putative branch site (score: 1)
                                   tttttttgtaatgtt  TA-rich tract