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gtaagttactaagacagattttgcacaaaagagttttattttatgcaaactaaaaggatttccttttcagGAAAATGCAGGAAAAAATAGACAATCTGAAGCAAACACTGAATCAATGTGAAGCAAGGGATACTGTTAGTGACTACTGCTCAGAAACTGACACTGAAGGT
species | Zea mays |
transcript | GRMZM2G472023_T03 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AACATGCATTACAGTCATATGGTCAGATTTGATAATATCGAAGAAGCCAA GAAAATGCAGGAAAAAATAGACAATCTGAAGCAAACACTGAATCAATGTGAEST: gi|18964934|gb|BM661294.1|BM661294
genomic: AACATGCATTACAGTCATATGGTCAGATTTGATAATATCGAAGAAGCCAAgtaagttact ... tccttttcagGAAAATGCAGGAAAAAATAGACAATCTGAAGCAAACACTGAATCAATGTGA
EST: AACATGCATTACAGTCATATGGTCAGATTTGATAATATCGAAGAAGCCAA GAAAATGCAGGAAAAAATAGACAATCTGAAGCAAACACTGAATCAATGTGAEST: gi|22490434|gb|BU050357.1|BU050357
genomic: AACATGCATTACAGTCATATGGTCAGATTTGATAATATCGAAGAAGCCAAgtaagttact ... tccttttcagGAAAATGCAGGAAAAAATAGACAATCTGAAGCAAACACTGAATCAATGTGA
EST: AACATGCATTACAGTCATATGGTCAGATTTGATAATATCGAAGAAGCCAA GAAAATGCAGGAAAAAATAGACAATCTGAAGCAAAC-CGTGAATCAATGTGEST: gi|89106518|gb|DY576735.1|DY576735
genomic: AACATGCATTACAGTCATATGGTCAGATTTGATAATATCGAAGAAGCCAAgtaagttact ... tccttttcagGAAAATGCAGGAAAAAATAGACAATCTGAAGCAAACAC-TGAATCAATGTG
EST: AACATGCATTACAGTCATATGGTCAGATTTGATAATATCGAAGAAGCCAA GAAAATGCAGGAAAAAATAGACAATCTGAAGCAAACACTGAATCAATGTGA
genomic: AACATGCATTACAGTCATATGGTCAGATTTGATAATATCGAAGAAGCCAAgtaagttact ... tccttttcagGAAAATGCAGGAAAAAATAGACAATCTGAAGCAAACACTGAATCAATGTGA
agattttgcacaaaagagttttattttatgcaaactaaaaggatttccttttcagGAAAATGCAGGAAAAAATAGACAATCTGAAGCAAACACTGAATCAATGTGAAGCAAGGGATACTGTTAGTGACTACTGCTCAGAAACTGACACTGAAGGT
aactaaa putative branch site (score: 2)
tttccttttc putative PPT
ttttattttatgcaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagttactaagacagattttgcacaaaagagttttattttatgcaaactaaaaggatttccttttcagGAAAATGCAGGAAAAAATAGACAATCTGAAGCAAACACTGAATCAATGTGAAGCAAGGGATACTGTTAGTGACTACTGCTCAGAAACTGACACTGAAGGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG