1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtaagtaagctgttccggtatctgatcataccgtttcagattccgttcctttccttcgaccaacgccagcagctgctgctgctggatctgaaacaaagaatgcagTATCTCAGGAATGAGGAGGTGAAGCATGAGCTGGACGACATTGAGGGCCTGACGGAGGAGAGGCTGGACGAGCTGCTGAGCACGTTCCTCCGGGACTTCG
species | Zea mays |
transcript | GRMZM2G468855_T01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CCGGCGGAGGAAGGGTCGTCAACGTCTCCTCCGACTTCGGGCTGCTACGC TATCTCAGGAATGAGGAGGTGAAGCATGAGCTGGACGACATTGAGGGCCTGEST: gi|71433713|gb|DR814763.1|DR814763
genomic: CCGGCGGAGGAAGGGTCGTCAACGTCTCCTCCGACTTCGGGCTGCTACGCgtaagtaagc ... aagaatgcagTATCTCAGGAATGAGGAGGTGAAGCATGAGCTGGACGACATTGAGGGCCTG
EST: CCGGCGGAGGAAGGGTCGTCAACGTCTCCTCCGACTTCGGGCTGCTACGC TATCTCAGGAATGAGGAGGTGAAGCATGAGCTGGACGACATTGAGGGCCTGEST: gi|91052469|gb|EB162887.1|EB162887
genomic: CCGGCGGAGGAAGGGTCGTCAACGTCTCCTCCGACTTCGGGCTGCTACGCgtaagtaagc ... aagaatgcagTATCTCAGGAATGAGGAGGTGAAGCATGAGCTGGACGACATTGAGGGCCTG
EST: CCGGCGGAGGAAGGGTCGTCAACGTCTCCTCCGACTTCGGGCTGCTACGC TATCTCAGGAATGAGGAGGTGAAGCATGAGCTGGACGACATTGAGGGCCTGEST: gi|71439323|gb|DR820373.1|DR820373
genomic: CCGGCGGAGGAAGGGTCGTCAACGTCTCCTCCGACTTCGGGCTGCTACGCgtaagtaagc ... aagaatgcagTATCTCAGGAATGAGGAGGTGAAGCATGAGCTGGACGACATTGAGGGCCTG
EST: CCGGCGGAGGAAGGGTCGTCAACGTCTCCTCCGACTTCGGGCTGCTACGC TATCTCAGGAATGAGGAGGTGAAGCATGAGCTGGACGACATTGAGGGCCTGEST: gi|93284169|gb|EB676433.1|EB676433
genomic: CCGGCGGAGGAAGGGTCGTCAACGTCTCCTCCGACTTCGGGCTGCTACGCgtaagtaagc ... aagaatgcagTATCTCAGGAATGAGGAGGTGAAGCATGAGCTGGACGACATTGAGGGCCTG
EST: CCGGCGGAGGAAGGGTCGTCAACGTCTCCTCCGACTTCGGGCTGCTACGC TATCTCAGGAATGAGGAGGTGAAGCATGAGCTGGACGACATTGAGGGCCTGEST: gi|31356128|gb|CD440485.1|CD440485
genomic: CCGGCGGAGGAAGGGTCGTCAACGTCTCCTCCGACTTCGGGCTGCTACGCgtaagtaagc ... aagaatgcagTATCTCAGGAATGAGGAGGTGAAGCATGAGCTGGACGACATTGAGGGCCTG
EST: CCGGCGGAGGAAGGGTCGTCAACGTCTCCTCCGACTTCGGGCTGCTACGC TATCTCAGGAATGAGGAGGTGAAGCATGAGCTGGACGACATTGAGGGCCTGEST: gi|91052468|gb|EB162886.1|EB162886
genomic: CCGGCGGAGGAAGGGTCGTCAACGTCTCCTCCGACTTCGGGCTGCTACGCgtaagtaagc ... aagaatgcagTATCTCAGGAATGAGGAGGTGAAGCATGAGCTGGACGACATTGAGGGCCTG
EST: CCGGCGGAGGAAGGGTCGTCAACGTCTCCTCCGACTTCGGGCTGCTACGC TATCTCAGGAATGAGGAGGTGAAGCATGAGCTGGACGACATTGAGGGCCTGEST: gi|78083622|gb|DV512015.1|DV512015
genomic: CCGGCGGAGGAAGGGTCGTCAACGTCTCCTCCGACTTCGGGCTGCTACGCgtaagtaagc ... aagaatgcagTATCTCAGGAATGAGGAGGTGAAGCATGAGCTGGACGACATTGAGGGCCTG
EST: GGAAGGGTCGTCAACGTCTCCTCCGACTTCGGGCTGCTACGC TATCTCAGGAATGAGGAGGTGAAGCATGAGCTGGACGACATTGAGGGCCTGEST: gi|71307392|gb|DR789895.1|DR789895
genomic: GGAAGGGTCGTCAACGTCTCCTCCGACTTCGGGCTGCTACGCgtaagtaagc ... aagaatgcagTATCTCAGGAATGAGGAGGTGAAGCATGAGCTGGACGACATTGAGGGCCTG
EST: CCGGCGGAGGAAGGGTCGTCAACGTCTCCTCCGACTTCGGGCTGCTACGC TATCTCAGGAATGAGGAGGTGAAGCATGAGCTGGACGACATTGAGGGCCTGEST: gi|76924560|gb|DV170008.1|DV170008
genomic: CCGGCGGAGGAAGGGTCGTCAACGTCTCCTCCGACTTCGGGCTGCTACGCgtaagtaagc ... aagaatgcagTATCTCAGGAATGAGGAGGTGAAGCATGAGCTGGACGACATTGAGGGCCTG
EST: GGCTGCTACGC TATCTCAGGAATGAGGAGGTGAAGCATGAGCTGGACGACATTGAGGGCCTGEST: gi|149082993|gb|EE172232.2|EE172232
genomic: GGCTGCTACGCgtaagtaagc ... aagaatgcagTATCTCAGGAATGAGGAGGTGAAGCATGAGCTGGACGACATTGAGGGCCTG
EST: CCGGCGGAGGAAGGGTCGTCAACGTCTCCTCCGACTTCGGGCTGCTACGC GEST: gi|149082993|gb|EE172232.2|EE172232
genomic: CCGGCGGAGGAAGGGTCGTCAACGTCTCCTCCGACTTCGGGCTGCTACGCgtaagtaagc ... aagaatgcag-
EST: CCGGCGGAGGAAGGGTCGTCAACGTCTCCTCCGACTTCGGGCTGCTACGC GEST: gi|22545715|gb|BU098074.1|BU098074
genomic: CCGGCGGAGGAAGGGTCGTCAACGTCTCCTCCGACTTCGGGCTGCTACGCgtaagtaagc ... aagaatgcag-
EST: CCGGCGGAGGAAGGGTCGTCAACGTCTCCTCCGACTTCGGGCTGCTACGC TATCTCAGGAACGAGGAGGTAAAGCATGAGCTGGACGACATTGAGGGEST: gi|89761516|gb|DY689501.1|DY689501
genomic: CCGGCGGAGGAAGGGTCGTCAACGTCTCCTCCGACTTCGGGCTGCTACGCgtaagtaagc ... aagaatgcagTATCTCAGGAATGAGGAGGTGAAGCATGAGCTGGACGACATTGAGGG
EST: CCGGCGGAGGAAGGGTCGTCAACGTCTCCTCCGACTTCGGGCTGCTACGC TATCTCAGGAATGAGGAGGTGAAGCATGAGCTGGACGACATTGAGGGCCTGEST: gi|148947887|gb|EC893381.2|EC893381
genomic: CCGGCGGAGGAAGGGTCGTCAACGTCTCCTCCGACTTCGGGCTGCTACGCgtaagtaagc ... aagaatgcagTATCTCAGGAATGAGGAGGTGAAGCATGAGCTGGACGACATTGAGGGCCTG
EST: GGCGGAGGAAGGGTCGTCAACGTCTCCTCCGACTTCGGGCTGCTACGC TATCTCAGGAATGAGGAGGTGAAGCATGAGCTGGACGACATTGAGGGCCTGEST: gi|71419697|gb|DR804867.1|DR804867
genomic: GGCGGAGGAAGGGTCGTCAACGTCTCCTCCGACTTCGGGCTGCTACGCgtaagtaagc ... aagaatgcagTATCTCAGGAATGAGGAGGTGAAGCATGAGCTGGACGACATTGAGGGCCTG
EST: CCGGCGGAGGAAGGGTCGTCAACGTCTCCTCCGACTTCGGGCTGCTACGC TATCTCAGGAATGAGGAGGTGAAGCATGAGCTGGACGACATTGAGGGCCTGEST: gi|71760118|gb|DR958055.1|DR958055
genomic: CCGGCGGAGGAAGGGTCGTCAACGTCTCCTCCGACTTCGGGCTGCTACGCgtaagtaagc ... aagaatgcagTATCTCAGGAATGAGGAGGTGAAGCATGAGCTGGACGACATTGAGGGCCTG
EST: CCGGCGGAGGAAGGGTCGTCAACGTCTCCTCCGACTTCGGGCTGCTACGC TATCTCAGGAATGAGGAGGTGAAGCATGAGCTGGACGACATTGAGGGCCTG
genomic: CCGGCGGAGGAAGGGTCGTCAACGTCTCCTCCGACTTCGGGCTGCTACGCgtaagtaagc ... aagaatgcagTATCTCAGGAATGAGGAGGTGAAGCATGAGCTGGACGACATTGAGGGCCTG
ttccttcgaccaacgccagcagctgctgctgctggatctgaaacaaagaatgcagTATCTCAGGAATGAGGAGGTGAAGCATGAGCTGGACGACATTGAGGGCCTGACGGAGGAGAGGCTGGACGAGCTGCTGAGCACGTTCCTCCGGGACTTCG
aaacaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtaagctgttccggtatctgatcataccgtttcagattccgttcctttccttcgaccaacgccagcagctgctgctgctggatctgaaacaaagaatgcagTATCTCAGGAATGAGGAGGTGAAGCATGAGCTGGACGACATTGAGGGCCTGACGGAGGAGAGGCTGGACGAGCTGCTGAGCACGTTCCTCCGGGACTTCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT