1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtacttttcttaattgtttctttttgccttttgtataccatatatccattgctcttactagtatacactatagATTCTGACAACACTGCGGAGGAACTTGGACACAACTGTGACATGTAAAATCCGTCTTCTGAACACACCTAAAGACACTGTGGAGTTGGCACGCCGGATTG
species | Zea mays |
transcript | GRMZM2G468693_T02 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GTGGAGGGATGGGTGCTGCATTACTCTCCAAACCTGAGCTTATACACGAT ATTTTGACAACATTGCGGAGGAACTTGGACACAACTGTGACATGTAAAATCEST: gi|67026483|gb|CO455232.1|CO455232
genomic: GTGGAGGGATGGGTGCTGCATTACTCTCCAAACCTGAGCTTATACACGATgtacttttct ... tacactatagATTCTGACAACACTGCGGAGGAACTTGGACACAACTGTGACATGTAAAATC
EST: ACTCTCCAAACCTGAGCTTATACACGAT ATTCTGACAACACTGCGGAGGAACTTGGACACAACTGTGACATGTAAAATCEST: gi|87153475|gb|DY398264.1|DY398264
genomic: ACTCTCCAAACCTGAGCTTATACACGATgtacttttct ... tacactatagATTCTGACAACACTGCGGAGGAACTTGGACACAACTGTGACATGTAAAATC
EST: GTGGAGGGATGGGTGCTGCATTACTCTCCAAACCTGAGCTTATACACGAT ATTTTGACAACATTGCGGAGGAACTTGGACACAACTGTGACATGTAAAATCEST: gi|76922868|gb|DV169214.1|DV169214
genomic: GTGGAGGGATGGGTGCTGCATTACTCTCCAAACCTGAGCTTATACACGATgtacttttct ... tacactatagATTCTGACAACACTGCGGAGGAACTTGGACACAACTGTGACATGTAAAATC
EST: GTGGAGGGATGGGTGCTGCATTACTCTCCAAACCTGAGCTTATACACGAT ATTCTGACAACACTGCGGAGGAACTTGGACACAACTGTGACATGTAAAATCEST: gi|76015755|gb|DT942925.1|DT942925
genomic: GTGGAGGGATGGGTGCTGCATTACTCTCCAAACCTGAGCTTATACACGATgtacttttct ... tacactatagATTCTGACAACACTGCGGAGGAACTTGGACACAACTGTGACATGTAAAATC
EST: GTGGAGGGATGGGTGCTGCATTACTCTCCAAACCTGAGCTTATACACGAT ATTCTGACAACACTGCGGAGGAACTTGGACACAACTGTGACATGTAAAATCEST: gi|5915492|gb|AW053133.1|AW053133
genomic: GTGGAGGGATGGGTGCTGCATTACTCTCCAAACCTGAGCTTATACACGATgtacttttct ... tacactatagATTCTGACAACACTGCGGAGGAACTTGGACACAACTGTGACATGTAAAATC
EST: GTGGAGGGATGGGTGCTGCATTACTCTCCAAACCTGAGCTTATACACGAT ATTCTGACAACACTGCGGAGGAACTTGGACACAACTGTGACATGTAAAATCEST: gi|18963975|gb|BM660736.1|BM660736
genomic: GTGGAGGGATGGGTGCTGCATTACTCTCCAAACCTGAGCTTATACACGATgtacttttct ... tacactatagATTCTGACAACACTGCGGAGGAACTTGGACACAACTGTGACATGTAAAATC
EST: GTGGAGGGATGGGTGCTGCATTACTCTCCAAACCTGAGCTTATACACGAT ATTTTGACAACATTGCGGAGGAACTTGGACACAACTGTGACATGTAAAATCEST: gi|89762291|gb|DY689959.1|DY689959
genomic: GTGGAGGGATGGGTGCTGCATTACTCTCCAAACCTGAGCTTATACACGATgtacttttct ... tacactatagATTCTGACAACACTGCGGAGGAACTTGGACACAACTGTGACATGTAAAATC
EST: GTGGAGGGATGGGTGCTGCATTACTCTCCAAACCTGAGCTTATACACGAT ATTCTGACAACACTGCGGAGGAACTTGGACACAACTGTGACATGTAAAATC
genomic: GTGGAGGGATGGGTGCTGCATTACTCTCCAAACCTGAGCTTATACACGATgtacttttct ... tacactatagATTCTGACAACACTGCGGAGGAACTTGGACACAACTGTGACATGTAAAATC
tctttttgccttttgtataccatatatccattgctcttactagtatacactatagATTCTGACAACACTGCGGAGGAACTTGGACACAACTGTGACATGTAAAATCCGTCTTCTGAACACACCTAAAGACACTGTGGAGTTGGCACGCCGGATTG
ctcttac putative branch site (score: 3)
ttttgtata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacttttcttaattgtttctttttgccttttgtataccatatatccattgctcttactagtatacactatagATTCTGACAACACTGCGGAGGAACTTGGACACAACTGTGACATGTAAAATCCGTCTTCTGAACACACCTAAAGACACTGTGGAGTTGGCACGCCGGATTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG