Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tatccctttcccagatagacccctcatgtgggacagtgggaagcctacaacactggatctgttctttttttattcatttgctgaaatcatttttgtgcagGTAAAGGGTGCTCAACTTTGGGGAACAGATATATATACAAATGATTCAGATCTTGTGGCTG

Basic information

species Zea mays
transcript GRMZM2G464000_T03
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G464000_T02 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os07g29450.1 (Oryza sativa), 3'ss of exon 4
---tatccctttcccagatagacccctcatgtgggacagtgggaagcctacaacactggatctgttcttt--ttttattcatttgctgaaatcatttttgtgcagGTAAAGGGTGCTCAACTTTGGGGAACAGATATATATACAAATGATTCAGATCTTGTGGCTG
   |||    | | ||  |||    |  || ||   ||     ||    |  |  ||   |   | ||||  |||| ||  |||  | |||||| | ||||| ||||||| |||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||
acatatttgctgctcatgtagttgacaaat-tgcttcat----aaattaatgaagctaattacttcctttgattttgtttgtttcttaaaatcactgttgtgtagGTAAAAGGTGCTCAACTTTGGGGAACGGATATTTATACAAATGATTCAGATCTTGTCGCTG

upper sequence: GRMZM2G464000_T02 (Zea mays), 3'ss of exon 3
lower sequence: AT5G08450.1 (Arabidopsis thaliana), 3'ss of exon 4
-----------------------------------------------------------------------tatccctttcccagatagacccctcatgtgggacagtgggaa-gcctacaacactggat----ctgttctttttttattcatttgctgaaa----tcatttttgtgcagGTAAAGGGTGCTCAACTTTGGGGAACAGATATATATACAAATGATTCAGATCTTGTGGCTG
                                                                       |||   |||       || |   | || ||    | |      |||||  |   ||       | | ||  || ||  | | ||||||| |    |   |  |||||||||||  ||||  ||||| ||||||||||||||||| ||| | ||||| |||||||| ||||
gtaagtcgaatatatatccaaatttttctcataatcattttcattgtttttcttctagatgacttggtgcatatagttttagttc-cagtcttttgatctgtttaattcacttcgcctattaatttgagaaacacagctcccttgtttgttacttgctgagacatttggctcgtgtgcagGTAAGAGGTGGCCAACTATGGGGAACAGATATATACACAGACGATTCCGATCTTGTTGCTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211146179|gb|FK958443.1|FK958443
EST:     CTCTTGAAATTCGGATACCTGCCGAATTTGTTACTTCCACTAATCGTCAA                         GTAAAGGGTGCTCAACTTTGGGGAACAGATATATATACAAATGATTCAGAT
genomic: CTCTTGAAATTCGGATACCTGCCGAATTTGTTACTTCCACTAATCGTCAAgtgagtgtac ... ttttgtgcagGTAAAGGGTGCTCAACTTTGGGGAACAGATATATATACAAATGATTCAGAT
EST: gi|26558158|gb|CA830393.1|CA830393
EST:     CTCTTGAAATTCGGATACCTGCCGAATTTGTTACTTCCACTAATCGTCAA                         GTAAAGGGTGCTCAACTTTGGGGAACAGATATATATACAAATGATTCAGAT
genomic: CTCTTGAAATTCGGATACCTGCCGAATTTGTTACTTCCACTAATCGTCAAgtgagtgtac ... ttttgtgcagGTAAAGGGTGCTCAACTTTGGGGAACAGATATATATACAAATGATTCAGAT
EST: gi|67024103|gb|CO452852.1|CO452852
EST:     CTCTTGAAATTCGGATACCTGCCGAATTTGTTACTTCCACTAATCGTCAA                         GTAAAGGGTGCTCAACTTTGGGGAACAGATATATATACAAATGATTCAGAT
genomic: CTCTTGAAATTCGGATACCTGCCGAATTTGTTACTTCCACTAATCGTCAAgtgagtgtac ... ttttgtgcagGTAAAGGGTGCTCAACTTTGGGGAACAGATATATATACAAATGATTCAGAT
EST: gi|21987866|gb|BQ779394.1|BQ779394
EST:     CTCTTGAAATTCGGATACCTGCCGAATTTGTTACTTCCACTAATCGTCAA                         GTAAAGGGTGCTCAACTTTGGGGAACAGATATATATACAAATGATTCAGAT
genomic: CTCTTGAAATTCGGATACCTGCCGAATTTGTTACTTCCACTAATCGTCAAgtgagtgtac ... ttttgtgcagGTAAAGGGTGCTCAACTTTGGGGAACAGATATATATACAAATGATTCAGAT
EST: gi|32931653|gb|CF036465.1|CF036465
EST:     CTCTTGAAATTCGGATACCTGCCGAATTTGTTACTTCCACTAATCGTCAA                         GTAAAGGGTGCTCAACTTTGGGGAACAGATATATATACAAATGATTCAGAT
genomic: CTCTTGAAATTCGGATACCTGCCGAATTTGTTACTTCCACTAATCGTCAAgtgagtgtac ... ttttgtgcagGTAAAGGGTGCTCAACTTTGGGGAACAGATATATATACAAATGATTCAGAT
EST: gi|32934961|gb|CF039773.1|CF039773
EST:     CTCTTGAAATTCGGATACCTGCCGAATTTGTTACTTCCACTAATCGTCAA                         GTAAAGGGTGCTCAACTTTGGGGAACAGATATATATACAAATGATTCAGAT
genomic: CTCTTGAAATTCGGATACCTGCCGAATTTGTTACTTCCACTAATCGTCAAgtgagtgtac ... ttttgtgcagGTAAAGGGTGCTCAACTTTGGGGAACAGATATATATACAAATGATTCAGAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tacaacactggatctgttctttttttattcatttgctgaaatcatttttgtgcagGTAAAGGGTGCTCAACTTTGGGGAACAGATATATATACAAATGATTCAGATCTTGTGGCTG
                                         tcattttt  CT-rich tract
                ttctttttttattcat  TA-rich tract