Sequence
atgc intronic sequence ATGC exonic sequencegtagtctccatgttttacttcatcaaagtacttcacatgttttctgttgagtcgctcaattttctcgtcacctccattgattggttggtggtattaatttccacagCCAAGATCGTTTGGATTTGCAGGGACAAAGGATAAACGTGCTGTTACAACCCAACAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G459702_T03 (Zea mays), 3'ss of exon 4
lower sequence: LOC_Os01g56620.1 (Oryza sativa), 3'ss of exon 4
gtagtctccatgttttacttcatcaaagtactt--cacatgttttctgttgagtcgctcaattttctcgtcacctccattgattggttggtggtattaatttccacagCCAAGATCGTTTGGATTTGCAGGGACAAAGGATAAACGTGCTGTTACAACCCAACAG
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gtgcatgttgtttgctgtttcattgaagtatttgcagggtgtcctgtttttagtttataaattcattcagc-tgtttgctaattgattggtgactaaacttcccacagCCTCGATCATTCGGGTTTGCAGGAACAAAGGATAAACGCGCTGTTACAACTCAACAG
upper sequence: GRMZM2G459702_T03 (Zea mays), 3'ss of exon 4
lower sequence: GLYMA19G43270.1 (Glycine max), 3'ss of exon 5
gtagtctccatgttttacttcatcaaagtacttcacatgttt---tctgttgag-tcgctcaattttctcg-tcacctccattgattggttggtggtattaatttccacagCCAAGATCGTTTGGATTTGCAGGGACAAAGGATAAACGTGCTGTTACAACCCAACAG
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-------atatatgcgatctgctaatattattactgatttatggataagctaagcttgttgagttcttccacttttctgttttaactgattgata--attaact--gacagCCAAAATCATTTGGATTTGCGGGTACAAAGGACAAGCGTGCTGTCACGACCCAAAGG
upper sequence: GRMZM2G459702_T03 (Zea mays), 3'ss of exon 4
lower sequence: GLYMA03G40600.1 (Glycine max), 3'ss of exon 5
gtagtctccatgttttacttcatcaaagtacttcacatgttttctgttgagtcgctcaattttctcg-tcacctccattgattggttggtggtattaatttccacagCCAAGATCGTTTGGATTTGCAGGGACAAAGGATAAACGTGCTGTTACAACCCAACAG
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--aataaatatatgcaatctgctaaaattattattgat-ttatggataagcttgttgagttctttcacttttctgttttaaatgattgata--attaact--gacagCCAAAATCATTTGGATTTGCGGGTACAAAGGACAAGCGTGCTGTCACGACCCAAAGG
upper sequence: GRMZM2G459702_T03 (Zea mays), 3'ss of exon 4
lower sequence: Vv14s0030g01840.t01 (Vitis vinifera), 3'ss of exon 5
-------------------------------------------------------------------------------------------------gtagtctccatgttttacttcatca-aagtacttcacat--gttttctgttgagtcgc-tcaattttctcgtcacctccattgattggttggtggtattaatttccacagCCAAGATCGTTTGGATTTGCAGGGACAAAGGATAAACGTGCTGTTACAACCCAACAG
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gtaattcatgggaaattatagccattcatttccaaatatttgtgatcctttgtaggtaataatggggatggcaggtggctgtattagtcatatagctgttgt-tggatgttctatcatattttgaacagtttgtatcggttgtatatgtagaagtgttaaatatctt-ttatttacattgattgat-----gtttctgtttcgacagCCAAGATCATTTGGATTTGCAGGCACAAAAGACAAACGCTCTGTATCTACACAAAGGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|28873554|gb|CB329529.1|CB329529EST: CATGAGGCACTAGGGGTTATAGGAAAATTGGCAGGGGTTCAG CCAAGATCGTTTGGATTTGCAGGGACAAAGGATAAACGTGCTGTTACAACC
genomic: CATGAGGCACTAGGGGTTATAGGAAAATTGGCAGGGGTTCAGgtagtctcca ... atttccacagCCAAGATCGTTTGGATTTGCAGGGACAAAGGATAAACGTGCTGTTACAACC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tcgctcaattttctcgtcacctccattgattggttggtggtattaatttccacagCCAAGATCGTTTGGATTTGCAGGGACAAAGGATAAACGTGCTGTTACAACCCAACAG
tattaat putative branch site (score: 2)
tttccac CT-rich tract
tattaattt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
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gtagtctccatgttttacttcatcaaagtacttcacatgttttctgttgagtcgctcaattttctcgtcacctccattgattggttggtggtattaatttccacagCCAAGATCGTTTGGATTTGCAGGGACAAAGGATAAACGTGCTGTTACAACCCAACAG
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