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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ccaaatagtaggaaaaagcaggaagcacagtgagagcatgtaggattataagtgtattaattctgtttgatctaaaattttcaattatcaatatttgcagATCTCTTGGAGCCATGTTTATTGCCCACTTCCTTAGCGCGTGAAACTGAACCATGTGCCCGATCGATTTCATGGTCTCAACAAGGATTTGCACCTAACTA

Basic information

species Zea mays
transcript GRMZM2G458266_T01
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G458266_T02 (Zea mays), 3'ss of exon 5
lower sequence: LOC_Os01g50690.1 (Oryza sativa), 3'ss of exon 3
ccaaatagtaggaaaaagcaggaagcacagtgagagcatgtaggattataagtgtattaattctgtttgatctaaa--attttcaattatcaatatttgcagATCTCTTGGAGCCATGTTTATTGCCCACTTCCTTAGCGCGTGAAACTGAACCATGTGCCCGATCGATTTCATGGTCTCAACAAGGATTTGCACCTAACTA
     | | ||  ||   |       |||    ||  | |||  | |  |  |  ||  |   ||         ||  | |||  |||    || |||||||||||||| || |||||| || |||||||||||||||| ||||||||||||  ||| || ||||| |||||||||||||||||||| ||| | ||||||| 
atttttggcagtcaacttctcttgtgacaaactgaaaa-gtaacactggacatcgatagaaggtgcgcaccaggaatcagtttttattgcttat-tttgcagATCTCTTTGAACCATGTATAATGCCCACTTCCTTAGCACGTGAAACTGAATTATGCGCTCGATCTATTTCATGGTCTCAACAAGGGTTTTCTCCTAACTC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttataagtgtattaattctgtttgatctaaaattttcaattatcaatatttgcagATCTCTTGGAGCCATGTTTATTGCCCACTTCCTTAGCGCGTGAAACTGAACCATGTGCCCGATCGATTTCATGGTCTCAACAAGGATTTGCACCTAACTA
         tattaattctgtttga  TA-rich tract